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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcatatttggtcatttctctttaatgctaggttccacattttttttaccatataatatgtattggtctcttgtttagCAAAATACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCT

Basic information

species Vitis vinifera
transcript Vv14s0108g00130.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os06g05250.3 (Oryza sativa), 3'ss of exon 5
gtatgtagcatatttggtcatttctcttta-atgctaggttccacattttttttaccatataatatgtattggtctcttgtttagCAAAATACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCT
   || |  || |    | |||    | || || || | |||    ||  ||||   ||     ||| | || |   || |  |||||| | || ||| |||| ||||| || || ||||||||||| || || ||  || |||||||||||||||| ||||| || || || ||||||||||||
--gtgcaaaat-tgcaattattatattatatatacttg-ttctctgttagttttctaat----catggagtgct---ttatccagCAAAGTGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCT

upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G46900.1 (Glycine max), 3'ss of exon 5
gtatgtagcatatttggtcatttctctttaatgctaggttccacattttttttaccatataatatgtattggtctcttgtttagCAAAATACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCT
|||  |  || | |||   |||| ||    | ||||  |||||| | | | ||||    |||||| | | | | |  | || |||||  || | || |||||||| ||| ||||| | || ||||||    |   ||| ||||| |||||||||||||||||| ||||||| || || ||||||
gtaaatgacaaacttg--tatttgtc----aggctaa-ttccac-tatgtattac----taatat-tctagctgtgcttttcagCAAGTTAGAAGTTCAGAATCCCGCTTCATTACCCTCTAATCCCAAGCATAAAGTGACAGCCTGTTGGGAACCTACAGTGTTAGCTACTATAATCATTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctaggttccacattttttttaccatataatatgtattggtctcttgtttagCAAAATACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCT
 ctttaat  putative branch site (score: 4)
                                           tctcttgttt  putative PPT
             acattttttttaccat  TA-rich tract