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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatggtacatacatttggaaattcaaatcatctatgaatagattttatatgcttctaatactagcaagctattgccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG

Basic information

species Vitis vinifera
transcript Vv14s0083g01050.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402815|gb|CF208442.1|CF208442
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|33405261|gb|CF210888.1|CF210888
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|110383984|gb|EC948394.1|EC948394
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|33402901|gb|CF208528.1|CF208528
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|110370316|gb|EC929381.1|EC929381
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|110379750|gb|EC944969.1|EC944969
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|110710966|gb|EE087623.1|EE087623
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
EST: gi|110398751|gb|EC965225.1|EC965225
EST:     ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAG                         GAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
genomic: ACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGgttagatggt ... ccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctatgaatagattttatatgcttctaatactagcaagctattgccaagcacagGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAG
                       ttctaat  putative branch site (score: 2)
     tgaatagattttatat  TA-rich tract