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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggcctgaaaaagaggcagtatcattagttctgtaacatatttgattattgctgatgatatttctatgatgaaacccagGCCTATATGACATGACTATGCTTCGATTTGAGCCAGAAAAAAGAGTGGGTTTCAGGGAGTACATGCGCTCTGACGGAACTCGATCTTATTTCTTCTGTAT

Basic information

species Vitis vinifera
transcript Vv14s0081g00660.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0081g00660.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G31030.2 (Glycine max), 3'ss of exon 5
-----------------------gtaatggcctgaaaaagaggcagtatca----ttagttctgtaacatatttgattattg-----ctgatgatatttctatgatgaaaccc--------agGCCTATATGACATGACTATGCTTCGATTTGAGCCAGAAAAAAGAGTGGGTTTCAGGGAGTACATGCGCTCTGACGGAACTCGATCTTATTTCTTCTGTAT
                        | ||| || ||      || |  || |    |||| | | |  |||| ||| |  ||      || | |   |  | ||||   |||||        |||||| ||||| ||||| |||||||||||||||||||| ||   |||||| |||||||| |||||||| || || ||||| ||||| |||||||| ||| |
gtaataaacaaaatagccaacttattatgtccagaggttttgggaaaataaaattttagctttatgtcataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT

upper sequence: Vv14s0081g00660.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G54650.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaatggcctgaaaaagaggcagtatcattagttctgtaacatat-ttgattattgctgatgatatttctatgatgaa-acc----cagGCCTATATGACATGACTATGCTTCGATTTGAGCCAGAAAAAAGAGTGGGTTTCAGGGAGTACATGCGCTCTGACGGAACTCGATCTTATTTCTTCTGTAT
               |  | || ||| |  || | | | |||||| || |  | |   || || | |  || | | || |||    ||||  ||||||||||||||||||| || ||||||||||| ||| | || || || ||||| ||  |||| ||||| ||||| |  || |||||||| ||| |
-------------gtaaggtcactattaagagctgtatcacatatgtttacaaataaaga-gaaactaataggctaaacaccttgacagGATTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAACGTGTAGGATTTAGGGAATATGTGCGGTCTGATGGAACCCTTTCCTATTTCTTTTGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttctgtaacatatttgattattgctgatgatatttctatgatgaaacccagGCCTATATGACATGACTATGCTTCGATTTGAGCCAGAAAAAAGAGTGGGTTTCAGGGAGTACATGCGCTCTGACGGAACTCGATCTTATTTCTTCTGTAT
                         tgctgat  putative branch site (score: 3)
         taacatatttgattat  TA-rich tract