1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttaaattttcagaacgtgataatgaggttggcatcaacgttgatgtttttaccggtaaattctcgcctgcactcatgtttttctatttttgcattgcagGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACTTGATCTGACCAACGAAGCTGAG
species | Vitis vinifera |
transcript | Vv14s0081g00070.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAAATGGTCCCTTGTCAAAGATACCTGCATATTACTTGAGGGTAAA GGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTCCCTTGTAAAGAAACTEST: gi|110360675|gb|EC923970.1|EC923970
genomic: GGAGGAAATGGTCCCTTGTCAAAGATACCTGCATATTACTTGAGGGTAAAgtgagtatat ... tgcattgcagGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACT
EST: GGAGGAAATGGTCCCTTGTCAAAGATACCTGCATATTACTTGAGGGTAAA GGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACT
genomic: GGAGGAAATGGTCCCTTGTCAAAGATACCTGCATATTACTTGAGGGTAAAgtgagtatat ... tgcattgcagGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACT
gtttttaccggtaaattctcgcctgcactcatgtttttctatttttgcattgcagGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACTTGATCTGACCAACGAAGCTGAG
tgtttttctattttt CT-rich tract
atgtttttctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaattttcagaacgtgataatgaggttggcatcaacgttgatgtttttaccggtaaattctcgcctgcactcatgtttttctatttttgcattgcagGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACTTGATCTGACCAACGAAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - catcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcac