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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataagtgtcccaataagatttggtgtacaaatttttggggttgtaccttttctttttctttgcttatagttgaatatatatatatatatatatatacattaagcctagtgtttttattgtttgtatttattttgaactgagttttgttggtgattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGCTCTCCAGTATAAACAA

Basic information

species Vitis vinifera
transcript Vv14s0068g02040.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251482|gb|CB969215.1|CB969215
EST:     TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAG                         ACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGC
genomic: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagt ... gattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGC
EST: gi|33405079|gb|CF210706.1|CF210706
EST:     TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAG                         ACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAAT
genomic: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagt ... gattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAAT
EST: gi|110687425|gb|EE064823.1|EE064823
EST:     TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAG                         ACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAAAATGGC
genomic: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagt ... gattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtttttattgtttgtatttattttgaactgagttttgttggtgattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGCTCTCCAGTATAAACAA
     ttttattgtttgtatt  TA-rich tract