1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gccagtggaaattttatgtactggatgtgtttgggtatggtaggttcctcagactacattgaggaatttggaaacatgacagaactatactttgtaacagTATACTTTCATCTTAACCGCAAGCAAAGAATTACCCAAACAGTGTACAAGGTATGGGACTACAACTGCAAAATACGCATCAAGGAAAAATGTAGGTGTCC
species | Vitis vinifera |
transcript | Vv14s0068g02020.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGTCAAACAAACATTTTTCGAGCTGTCAAGCATTGCTTACCCGGACCT TATACTTTCATCTTAACCGCAAGCAAAGAATTACCCAAACAGTGTACAAGGEST: gi|26262195|gb|CA813258.1|CA813258
genomic: AAGGTCAAACAAACATTTTTCGAGCTGTCAAGCATTGCTTACCCGGACCTgtaagaataa ... tttgtaacagTATACTTTCATCTTAACCGCAAGCAAAGAATTACCCAAACAGTGTACAAGG
EST: AAGGTCAAACAAACATTTTTCGAGCTGTCAAGCATTGCTTAGCCGGACCT TATACTTTCATCTTAACCGCAAGCAAAGAATT
genomic: AAGGTCAAACAAACATTTTTCGAGCTGTCAAGCATTGCTTACCCGGACCTgtaagaataa ... tttgtaacagTATACTTTCATCTTAACCGCAAGCAAAGAATT
tcctcagactacattgaggaatttggaaacatgacagaactatactttgtaacagTATACTTTCATCTTAACCGCAAGCAAAGAATTACCCAAACAGTGTACAAGGTATGGGACTACAACTGCAAAATACGCATCAAGGAAAAATGTAGGTGTCC
tatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagtggaaattttatgtactggatgtgtttgggtatggtaggttcctcagactacattgaggaatttggaaacatgacagaactatactttgtaacagTATACTTTCATCTTAACCGCAAGCAAAGAATTACCCAAACAGTGTACAAGGTATGGGACTACAACTGCAAAATACGCATCAAGGAAAAATGTAGGTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -agtggaaa
- - - - - - - tatgtac
- - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - -tggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaac