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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctatgaacatttcccttctcatttattagtcgcatttcttagctattctcatccatatttaggcttgatgaggtgagcatttatgagtgtaaagtaagcatgtcttctatttttctgtttgtagGGGAGCTAAAGATTGCTCAAATCGGACTCTTTGTGAGGAGCATCTTAATTTATTATTACCAGCAAAACCCCCTTTTCACCCTCGCCAGTTTCAAACATGT

Basic information

species Vitis vinifera
transcript Vv14s0068g01150.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352782343|gb|FQ470246.1|FQ470246
EST:     GTTCGGCCAGATGGATGGTTGAACTATGCTGCAAAAAGGATAGCTCAATT                         GGGAGCTAAAGATTGCTCAAATCGGACTCTTTGTGAGGAGCATCTTAATTT
genomic: GTTCGGCCAGATGGATGGTTGAACTATGCTGCAAAAAGGATAGCTCAATTgtatgtctat ... ctgtttgtagGGGAGCTAAAGATTGCTCAAATCGGACTCTTTGTGAGGAGCATCTTAATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggtgagcatttatgagtgtaaagtaagcatgtcttctatttttctgtttgtagGGGAGCTAAAGATTGCTCAAATCGGACTCTTTGTGAGGAGCATCTTAATTTATTATTACCAGCAAAACCCCCTTTTCACCCTCGCCAGTTTCAAACATGT
                                 tcttctatttttctgt  CT-rich tract
                                   ttctattttt  TA-rich tract