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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaattatttcattgaaatcatgcacaaacattccttgtggctaacatttttaattatgttctaatccagTGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCATTTACCGAGAAATGATCGCGGCTGGTCTGAGAGTCTGGGTTTTCAG

Basic information

species Vitis vinifera
transcript Vv14s0068g00260.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G02110.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------gtgagtaaattatttcattgaaatcatgcacaaacattccttgtggctaacatt-tttaattatgttctaatccagTGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCATTTACCGAGAAATGATCGCGGCTGGTCTGAGAGTCTGGGTTTTCAG
               | ||     |||  |   |    | |   | ||       ||   | ||  ||| ||||||| |  | |    ||||||||| |||||||| ||||||||||||||||    | | || ||||| || ||||| |||||||| || |  ||  | ||||| |||||||||||
gttcgtaccaaaattgagatagtgttaaatatctttgttgaacaataagttggttttaaagttagaattgtttaatttttgtgtgg--cagTGAGGTGCTAAACCGGAATTGGAACGACACAGATTCAACGGTTCTCCCTATATACCGGGAAATGATTGCCGGCGGAATTAGAGTTTGGGTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30255072|gb|CB971519.1|CB971519
EST:     GCACTGCATGCCAATACTACCAAAATTCCCTACGGATGGACTGCCTGCAG                         TGAGGTCCTCAACCGCAATTGGAACGACACAGCTGAATCCGTCCTCCCCAT
genomic: GCACTGCATGCCAATACTACCAAAATTCCCTACGGATGGACTGCCTGCAGgtgagtaaat ... tctaatccagTGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCAT
EST: gi|110686749|gb|EE064741.1|EE064741
EST:     GCACTGCATGCCAATACTACCAAAATTCCCTACGGATGGACTGCCTGCAG                         TGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCAT
genomic: GCACTGCATGCCAATACTACCAAAATTCCCTACGGATGGACTGCCTGCAGgtgagtaaat ... tctaatccagTGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcatgcacaaacattccttgtggctaacatttttaattatgttctaatccagTGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCATTTACCGAGAAATGATCGCGGCTGGTCTGAGAGTCTGGGTTTTCAG
                                            ttctaat  putative branch site (score: 2)
                           taacatttttaattat  TA-rich tract