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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctattatataattgctaatatgccctcaaggtgtcatattataaatgagtaaattaaaactttgattttggttttgtgatgtttcagAAGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGG

Basic information

species Vitis vinifera
transcript Vv14s0066g01670.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G01470.1 (Glycine max), 3'ss of exon 5
--------gtgctattat-ataattgcta-atatgccctcaaggtgtcatattataaatgagtaaattaaaactttgattttggttttgtgatgtttcagAAGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGG
            || | | | |||| ||| ||||   |  | |     | | |||| |  |   |  || | |  |   | |  |  ||   |  |||||||  | |||   ||  ||   ||||||||||| ||||  | ||| ||  ||||||| || ||||| ||||||||  |||||||||| ||||||||||| |
acatatcaaaattaatgtcacaattactatatataaacagatgtaaagaaaatatatactaactatgtacatccatctctattttaatgcactcattcagAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACCATTGATTGGACTGTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706450|gb|FC055497.1|FC055497
EST:     TGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAG                         ACGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTG
genomic: TGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAGgtgctattat ... gatgtttcagAAGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatattataaatgagtaaattaaaactttgattttggttttgtgatgtttcagAAGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGG
                           ctttgat  putative branch site (score: 5)
     attataaatgagtaaa  TA-rich tract