1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagtatctactttttaggagctacccactcagggttgagtttgtaaacaaagtgttggattttgttgcttcttaacttctgtttttgcactcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATCTGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTC
species | Vitis vinifera |
transcript | Vv14s0066g01660.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAG TATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATEST: gi|71884182|gb|DT033237.1|DT033237
genomic: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtacacattt ... tcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
EST: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAG TATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATEST: gi|71885148|gb|DT034203.1|DT034203
genomic: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtacacattt ... tcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
EST: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAG TATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATEST: gi|34546836|gb|CF515068.1|CF515068
genomic: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtacacattt ... tcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
EST: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAG TACGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATEST: gi|71883362|gb|DT032417.1|DT032417
genomic: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtacacattt ... tcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
EST: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAG TATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATEST: gi|71884579|gb|DT033634.1|DT033634
genomic: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtacacattt ... tcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
EST: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAG TATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
genomic: TTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtacacattt ... tcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCAT
aacaaagtgttggattttgttgcttcttaacttctgtttttgcactcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATCTGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTC
tcttaac putative branch site (score: 2)
tcatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtatctactttttaggagctacccactcagggttgagtttgtaaacaaagtgttggattttgttgcttcttaacttctgtttttgcactcatatatagTATGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATCTGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTC
- - - - - - - - - - - -cccactc
- - - - - - - - - - - - - - - -gggttga
- - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca