1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtggtcagtttttgccacattgaaacaaatggtgacagtacattctgtgtcttttgaaaatgatttgatagtgtttcccatatgcttttcagAGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTTCAG
species | Vitis vinifera |
transcript | Vv14s0066g01310.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGCACTTATTACGTTGGGTGGTCATAGATCTTTGTCATCAATTAATAG AGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTTEST: gi|161717666|gb|FC068532.1|FC068532
genomic: AATGCACTTATTACGTTGGGTGGTCATAGATCTTTGTCATCAATTAATAGgtggtcagtt ... tgcttttcagAGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTT
EST: AATGCACTTATTACGTTGGGTGGTCATAGATCTTTGTCATCAATTAATAG AGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTT
genomic: AATGCACTTATTACGTTGGGTGGTCATAGATCTTTGTCATCAATTAATAGgtggtcagtt ... tgcttttcagAGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTT
gtacattctgtgtcttttgaaaatgatttgatagtgtttcccatatgcttttcagAGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTTCAG
atttgat putative branch site (score: 5)
tgcttttc putative PPT
ttttgaaaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtcagtttttgccacattgaaacaaatggtgacagtacattctgtgtcttttgaaaatgatttgatagtgtttcccatatgcttttcagAGGTAAAGTATACACGTTTTTGCGGCGAATGAAAGACCCTAGTGGAGCCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG