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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagaccaatctaaagtttttcaacaaggaaattgagcacatgtgcaatatgtgtttctagtgctacaatgatactctgtacatattctttcatactgaaataattagtactaaaataagttgcagttagccctgatgctcataagtgaccttatgactccattttgaaacagGACTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCACGTAATGTGTTCAGCAAAAAATTCATGGTCAACAAAGAG

Basic information

species Vitis vinifera
transcript Vv14s0066g01000.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01000.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os05g07870.1 (Oryza sativa), 3'ss of exon 4
gtatgagaccaatctaaagtttttcaacaaggaaattgagcacatgtgcaatatgtgtttctagtgctacaatgatactctgtacat-attctttca-tactgaaataattagtactaaaataagttgcagttagccctgatgctcataagtgaccttatgactccattttgaaacagGACTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCACGTAATGTGTTCAGCAAAAAATTCATGGTCAACAAAGAG
                                   |       || |   || | |  ||| | |||   |    |     || | | || |||| | | |||   |  |   |  | ||  ||  | || |      || ||      |||  | |    |     |  | ||||||||  || || |||||||| |||||||||||| | || |||||||| || ||||| |||||||| ||| |  |||   | ||||||
----------------------------------gtcagtggtatctattatctttaattccaatgcctaagaactgaggagtccttgatgctttgacttctgtcttcgtatttgtttaagcaa--tacaatgcattttgttgtaatgtagtatcgtgcaaaacttttgataaaacagGATAGGATTTTGGAGTGCCATGGCTTCCAATCTTACCAATCAATCGCGAAATGTTTTCAGCAAGAAACTTCTGGCTGATAAAGAG

upper sequence: Vv14s0066g01000.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G01550.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgagaccaatctaaagtttttcaacaaggaaattgagcacatgtgcaatatgtgtttctagtgctacaatgatactctgtacatattctttcatactgaaataattagtactaa-aataagttgcagtt--agccctgatgctcataagtgaccttatgactccattttgaaacagGACTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCACGTAATGTGTTCAGCAAAAAATTCATGGTCAACAAAGAG
                                                                              | || |||         | |   ||| || ||||| |    ||||  |   | |  ||   | ||     | | | |  | |||         | || ||||| ||||||||| |||||||||||||| ||| |||| ||||||||||| |||||  |||| ||||||||||||||    ||    
-----------------------------------------------------------------------------gtatgaacaacaagaacaagaacaaaaaaaatagtattcttgataaacttttgatgaagttttaattgatttgattaat-tcatggtattgggataaaccagGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgcagttagccctgatgctcataagtgaccttatgactccattttgaaacagGACTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCACGTAATGTGTTCAGCAAAAAATTCATGGTCAACAAAGAG
            ccctgat  putative branch site (score: 4)
                                       ctccatttt  putative PPT
                                           attttgaaa  TA-rich tract