1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actaatgatttcttaccttcccacttttactttaaatatttctctcatattttatagccgtcaagtcatcttgacttacagctttcctttgttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTCACTTCATGTTGGAAAGAGGACCCAAATACTCGGCCTAACTTCAGCCAAA
species | Vitis vinifera |
transcript | Vv14s0066g00370.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAG AATATGAGGCCTAGTGCGGAGGACCTCCCAGAGGACTTGGCTTTAATTGTCEST: gi|110426961|gb|EC993390.1|EC993390
genomic: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAGgtaattatct ... gttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTC
EST: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAG AATATGAGGCCTAGTGCGGAGGACCTCCCAGAGGACTTGGCTTTAATTGTCEST: gi|110382036|gb|EC938309.1|EC938309
genomic: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAGgtaattatct ... gttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTC
EST: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAG AATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTCEST: gi|110403186|gb|EC964483.1|EC964483
genomic: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAGgtaattatct ... gttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTC
EST: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAG AATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTC
genomic: CATTTGAAGGCATGTCAAATCTGCAGGCAGCCTATGCAGCTGCTTTTAAGgtaattatct ... gttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTC
catattttatagccgtcaagtcatcttgacttacagctttcctttgttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTCACTTCATGTTGGAAAGAGGACCCAAATACTCGGCCTAACTTCAGCCAAA
gacttac putative branch site (score: 2)
ctttcctttgtttttt putative PPT
tttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaatgatttcttaccttcccacttttactttaaatatttctctcatattttatagccgtcaagtcatcttgacttacagctttcctttgttttttcagAATATGAGGCCTAGTGCCGAGGACCTCCCAGAGGACTTGGCTTTAATTGTCACTTCATGTTGGAAAGAGGACCCAAATACTCGGCCTAACTTCAGCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - -ctctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagtc