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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataccatacattaatttctatagatttttagctttcccttcttgttgatcatacagaaaacaacattcctttcatatattccgggtgatcttcagGTCTATGAAGGTGAAAGAAGCTTGACAAAAGACTGTCGTGAGCTGGGGAGGTTCGAGCTCTCTGGAATTCCACCTGCTCCAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g02340.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71880639|gb|DT029694.1|DT029694
EST:     CACTACCTACCAGGATCAGCAACCCACAGTATCAATCAAG                         GTCTATGAAGGTGAAAGAAGCTTGACAAAAGACTGTCGTGAGCTGGGGAGG
genomic: CACTACCTACCAGGATCAGCAACCCACAGTATCAATCAAGgtacatacca ... tgatcttcagGTCTATGAAGGTGAAAGAAGCTTGACAAAAGACTGTCGTGAGCTGGGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttgatcatacagaaaacaacattcctttcatatattccgggtgatcttcagGTCTATGAAGGTGAAAGAAGCTTGACAAAAGACTGTCGTGAGCTGGGGAGGTTCGAGCTCTCTGGAATTCCACCTGCTCCAAG
  tgttgat  putative branch site (score: 4)
                                                tcttc  putative PPT
                             tttcatatatt  TA-rich tract