1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattctctagttgccatgtagcaattatgttagtgtgatgtgtgcattctttgatctattcttttattaaatgtaaccaaacaacttggaatgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTAAAGAGAAATCTCCTTGCATCATTTTTATAGATGAAATTGATGCCATAG
species | Vitis vinifera |
transcript | Vv14s0060g02260.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTNCA-CTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTEST: gi|110384620|gb|EC949072.1|EC949072
genomic: TCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCT-CAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|110387216|gb|EC951866.1|EC951866
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|110711112|gb|EE087285.1|EE087285
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|110718444|gb|EE095285.1|EE095285
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|110685213|gb|EE063376.1|EE063376
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTTGTC-GTGATGCCTTTCAGCTTGCEST: gi|110724441|gb|EE100272.1|EE100272
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTT-GTCCGTGATGCCTTTCAGCTTGC
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAAGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGEST: gi|110722856|gb|EE099502.1|EE099502
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGG
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAAGCCCTCAACTTGTCCAG ATGTTCATTGGGGGATGGGGCGAAACTTGTCCGEST: gi|30252313|gb|CB969864.1|CB969864
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGG-ATGGGGCGAAACTTGTCCG
EST: ACAAATGCCACTTTTTTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGTGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|30252322|gb|CB969873.1|CB969873
genomic: ACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGTGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|110405468|gb|EC971009.1|EC971009
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|30255105|gb|CB971552.1|CB971552
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|30252235|gb|CB969786.1|CB969786
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGTGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|30300725|gb|CB977519.1|CB977519
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: TCAAACAAATGCCACTTTNTC-GAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGGTGCCTTTCAGCTTGCTEST: gi|110375176|gb|EC940137.1|EC940137
genomic: TCAAACAAATGCCACTTT-TCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|34544589|gb|CF512821.1|CF512821
genomic: CTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCGATCAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTEST: gi|30252226|gb|CB969777.1|CB969777
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
EST: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAG ATGTTCATTGGGGATGGGGTGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
genomic: CTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatatt ... atgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCT
attctttgatctattcttttattaaatgtaaccaaacaacttggaatgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTAAAGAGAAATCTCCTTGCATCATTTTTATAGATGAAATTGATGCCATAG
atgtaac putative branch site (score: 3)
atctattcttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattctctagttgccatgtagcaattatgttagtgtgatgtgtgcattctttgatctattcttttattaaatgtaaccaaacaacttggaatgtattcagATGTTCATTGGGGATGGGGCGAAACTTGTCCGTGATGCCTTTCAGCTTGCTAAAGAGAAATCTCCTTGCATCATTTTTATAGATGAAATTGATGCCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - -ccatgta
- - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaca