1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccatggaagaagaaaataccagtgaactctggatgaaaatggaaaggattacttctgttgtagaaaattcctgacttagtttttgatcttcatttgatagGAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAG
species | Vitis vinifera |
transcript | Vv14s0060g02190.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGCTCGCTCCATTACCAAGCAATTCCTCTAAAGGTTGGGTGGCTCCTG GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATAEST: gi|30328734|gb|CD011996.1|CD011996
genomic: CTGGCTTGCTCCATTACCAAGCAATTCCTCTAAAGGTTGGGTGGCTCCTGgtatgtctcc ... catttgatagGAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATA
EST: AAAGGTTGGGTGGCTCCTG GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATAEST: gi|30328427|gb|CD011689.1|CD011689
genomic: AAAGGTTGGGTGGCTCCTGgtatgtctcc ... catttgatagGAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATA
EST: CTGGCTCGCTCCATTACCAAGCAATTCCTCTAAAGGTTGGGTGGCTCCTG GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATA
genomic: CTGGCTTGCTCCATTACCAAGCAATTCCTCTAAAGGTTGGGTGGCTCCTGgtatgtctcc ... catttgatagGAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATA
ggattacttctgttgtagaaaattcctgacttagtttttgatcttcatttgatagGAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAG
tcttcattt CT-rich tract
tagaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatggaagaagaaaataccagtgaactctggatgaaaatggaaaggattacttctgttgtagaaaattcctgacttagtttttgatcttcatttgatagGAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAG
ccatgga
- - - - -aagaaaa
- - - - - agaaaat
- - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - -gaaagga