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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaattcgatctttgtgaaatgaacctatatctttaaatattgagatatgtggtaatctttctgagaatggtgaagtatttaccctatgatttgtttgatagAAAGAAGCTGAGAAGCGACAGGCTTTAAAGAAGCAAGGGCATGGAGAATACAGGGAGGTAACTGAGGCGGACTTCTTGGGTGAAGTCACTGGGAGTGAAA

Basic information

species Vitis vinifera
transcript Vv14s0036g00970.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G05990.1 (Glycine max), 3'ss of exon 5
gtcagaat-tcgatctttg-tgaaatgaacctatatctttaaatattgagatatgtggtaatctttctgagaatggtgaagtatttac--cctatgatttgtttgatagAAAGAAGCTGAGAAGCGACAGGCTTTAAAGAAGCAAGGGCATGGAGAATACAGGGAGGTAACTGAGGCGGACTTCTTGGGTGAAGTCACTGGGAGTGAAA
||  |||| || || | |  ||| ||| |  |  || || || | ||    | |       |  ||   |   ||      ||||| |  |  |   ||| ||| |||||||||||| ||||| ||  |||  |  |||||| |||| ||||| |||| |||||| ||||| ||||  || ||||| |||||||||||||| |||||||
gtgggaatctccatatgtactgagatgcaaatg-atattcaattttttgtttttacttctgttatttataatttgccttgctatttgcaactgaatttttctttaatagAAAGAAGCAGAGAAACGGGAGGAATGGAAGAAGAAAGGTCATGGGGAATTCAGGGAAGTAACCGAGGGTGATTTCTTAGGTGAAGTCACTGGAAGTGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtggtaatctttctgagaatggtgaagtatttaccctatgatttgtttgatagAAAGAAGCTGAGAAGCGACAGGCTTTAAAGAAGCAAGGGCATGGAGAATACAGGGAGGTAACTGAGGCGGACTTCTTGGGTGAAGTCACTGGGAGTGAAA
                                           tttgttt  CT-rich tract
                          aagtattta  TA-rich tract