Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgattcaaactgttgaaaaatagtattatttcttcaaattgaaatccatatccttcagtgttctcattgattaccatcttggctccaatttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG

Basic information

species Vitis vinifera
transcript Vv14s0030g02180.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os11g37890.3 (Oryza sativa), 3'ss of exon 4
atgattcaaactgttgaaaaatagtattatttcttcaaattgaaatccatatccttcagtgttctcattgatta--ccatcttggctccaatttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG
      ||   |        ||   |  |    | | ||||    | ||| |  ||  | |  |   | ||  |   |||       |||| | |  || ||| |||||||||| || ||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||||||||
-catcacagcataccatgtgatctaaagagacataccaatttgtctacatttttttttgggggccggtcgaccaagtcattacattgccaaat-gcattcagGTTGACAAAGTCCGATTTCCGTGAGCCTGTAAACATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGAGATAGTCCTCAGCTTTGAGAACAAG

upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 5
--atgattcaaactgttgaaaaata---gtattatttcttcaaattgaaatccatatccttcagtgttctcattgattaccatcttggctccaatttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG
   | ||   |  |  |||| ||||   || ||  | |   || ||  ||   | ||||||   || |    |    |   || |||  || ||      |  ||| | |||||||| || ||||| ||||| || ||||||||||| || || ||||| |||||||| |||||||| || || || || |||||||||||||||
ggcttatctgagtt-ctgaataatactcgttttggtacagaaagttccaaatgaaatccttttatggtgaactaagctgttattttg--tcaaac--acatccagGTTAACAAAGTCCGATTTCCGTGAGCCTGTAAACATTGGAAGCGACGAAATGGTGAGCATGAACGAGATGGCGGAAATGGTCCTGAGCTTTGAGAACAAG

upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ12864 (Selaginella moellendorffii), 3'ss of exon 4
atgattcaaactgttgaaaaatagtattatttcttcaaattgaaatccatatccttcagtgttctcattgattaccatcttggctccaat-ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG
                     |     | ||||| |    || |||  ||   |    |  | || | ||  |      ||  ||    | | |||   |||||||||||||| ||||| || || ||  | || || ||||||||||||||||| |||||||| |||||||| |||||| |  |  | ||||   |||||
------------------gtgtgtctctttttctgctttctggaattgatggtcgatcg-atactaaatgccttttgctttttctttcttgtcgtgcacagGCTGACAAAGTCGGACTTTCGTGAACCGCTCAATATCGGAAGTGATGAGATGGTGAGCATGAACGAGATGGCTGAGATTATCTTGGGTTTTGGAGACAAG

upper sequence: Vv14s0030g02180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ09286 (Selaginella moellendorffii), 3'ss of exon 4
atgattcaaactgttgaaaaatagtattatttcttcaaattgaaatccatatccttcagtgttctcattgattaccatcttggctccaat-ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG
                     |     | ||||| |    || |||  ||   |    |  |||| | ||  |      ||  ||    | | |||   |||||||||||||| ||||| || || ||  | || || ||||||||||||||||| |||||||| |||||||| |||||| |  |  | ||||   |||||
------------------gtgtgtctctttttctgctttctggaattgatggtcgatcg-attctaaatgtcttttgctttttctttcttgtcgtgcacagGCTGACAAAGTCGGACTTTCGTGAACCGCTCAATATCGGAAGTGATGAGATGGTGAGCATGAACGAGATGGCTGAGATTATCTTGGGTTTTGGAGACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458534|gb|BM436812.1|BM436812
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|77586516|gb|DV222374.1|DV222374
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|33403428|gb|CF209055.1|CF209055
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|71871565|gb|DT020620.1|DT020620
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|34546402|gb|CF514634.1|CF514634
EST:     C-AACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|352795293|gb|FQ476408.1|FQ476408
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110363526|gb|EC927120.1|EC927120
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351016517|gb|FQ423944.1|FQ423944
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAATTCGGACTTCCGGGAGCC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCC
EST: gi|351017155|gb|FQ424582.1|FQ424582
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTC
EST: gi|351028622|gb|FQ446295.1|FQ446295
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTG
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTG
EST: gi|56409453|gb|CX017705.1|CX017705
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351043715|gb|FQ431068.1|FQ431068
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCCGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|33405332|gb|CF210959.1|CF210959
EST:     CATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|27583586|gb|CB006281.1|CB006281
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|27583046|gb|CB005741.1|CB005741
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|34546486|gb|CF514718.1|CF514718
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|30305414|gb|CB982208.1|CB982208
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|349823700|gb|FQ415110.1|FQ415110
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAAGTGTTCTCAG                         GCTGACAAAGTCGGACTTTCGGGAGCC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCC
EST: gi|33405246|gb|CF210873.1|CF210873
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110363770|gb|EC927384.1|EC927384
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110426688|gb|EC993106.1|EC993106
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAG                         GCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110424690|gb|EC991058.1|EC991058
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110703921|gb|EE081281.1|EE081281
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACTTTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110371108|gb|EC934874.1|EC934874
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110361073|gb|EC924526.1|EC924526
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110687500|gb|EE064980.1|EE064980
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|71890477|gb|DT039532.1|DT039532
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351026026|gb|FQ428038.1|FQ428038
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAAAAGGTGTTCTCAG                         GCTGACAAAGTC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTC
EST: gi|351045745|gb|FQ440930.1|FQ440930
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTC
EST: gi|34542876|gb|CF511108.1|CF511108
EST:     GGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: GGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351024115|gb|FQ423538.1|FQ423538
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGG
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGG
EST: gi|110426363|gb|EC992769.1|EC992769
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|349808778|gb|FQ406628.1|FQ406628
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAATCGGACTTCCGGGA
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGA
EST: gi|34542792|gb|CF511024.1|CF511024
EST:     GGTGTTCTCAG                         GCTGAC-AAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: GGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110698029|gb|EE075575.1|EE075575
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|22015203|gb|BQ800237.1|BQ800237
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351016699|gb|FQ424126.1|FQ424126
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGC
EST: gi|351041129|gb|FQ444106.1|FQ444106
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGA
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGA
EST: gi|110360431|gb|EC923523.1|EC923523
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|87585433|gb|DY474153.1|DY474153
EST:     C-AACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110684799|gb|EE062490.1|EE062490
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|56409139|gb|CX017391.1|CX017391
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351046118|gb|FQ442496.1|FQ442496
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|33403511|gb|CF209138.1|CF209138
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351019166|gb|FQ429326.1|FQ429326
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGG
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGG
EST: gi|110703408|gb|EE080230.1|EE080230
EST:     AACTCGTTCTTTCACCTTCACTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: AACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110685361|gb|EE063692.1|EE063692
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351033241|gb|FQ462013.1|FQ462013
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAA
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAA
EST: gi|110719553|gb|EE094782.1|EE094782
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAAGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|352787053|gb|FQ476086.1|FQ476086
EST:     GTAGAAGGTGTTCTCCG                         GCTGACAGAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: GTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110696058|gb|EE074787.1|EE074787
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110374847|gb|EC939785.1|EC939785
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|349809923|gb|FQ398548.1|FQ398548
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCC
EST: gi|156735754|gb|EV239875.1|EV239875
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|349824153|gb|FQ417540.1|FQ417540
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATAAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110702246|gb|EE080738.1|EE080738
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351016837|gb|FQ424264.1|FQ424264
EST:     AAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGGTGTC-TCAG                         GCTGACAAAGTCCGACTT
genomic: AAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGG-TGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTT
EST: gi|351019615|gb|FQ439432.1|FQ439432
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTC
EST: gi|32250120|gb|CD715939.1|CD715939
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|349820183|gb|FQ406859.1|FQ406859
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTTCCGG-AGCC
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTT-CCGGGAGCC
EST: gi|22012401|gb|BQ797435.1|BQ797435
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAG                         GCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|110701592|gb|EE079340.1|EE079340
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|351031927|gb|FQ460184.1|FQ460184
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGGAAGTG
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGG-AAGTG
EST: gi|110382558|gb|EC946859.1|EC946859
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|32245541|gb|CD711360.1|CD711360
EST:     TCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: TCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|33409632|gb|CF215259.1|CF215259
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|349824390|gb|FQ417777.1|FQ417777
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGA
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGA
EST: gi|110388483|gb|EC953241.1|EC953241
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
EST: gi|71890476|gb|DT039531.1|DT039531
EST:     CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTTCTCAG                         GCTGACAAAGTCGGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT
genomic: CAAACTCGTTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTCAGgtgagcaatg ... ttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatatccttcagtgttctcattgattaccatcttggctccaatttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG
                    cattgat  putative branch site (score: 4)
                     attgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgattcaaactgttgaaaaatagtattatttcttcaaattgaaatccatatccttcagtgttctcattgattaccatcttggctccaatttgtgtttagGCTGACAAAGTCAGACTTCCGGGAGCCAGTGAACATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCCGAGATTGTTCTCAGCTTTGAGAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - -tcaaact
- - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - aaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctccaa