1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATATACACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCAC
species | Vitis vinifera |
transcript | Vv14s0030g02020.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATAEST: gi|30252864|gb|CB970415.1|CB970415
genomic: TTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATAEST: gi|110425276|gb|EC991658.1|EC991658
genomic: TTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATAEST: gi|71875780|gb|DT024835.1|DT024835
genomic: TTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATAEST: gi|33404078|gb|CF209705.1|CF209705
genomic: TTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCCG AGATTAAATCCTAEST: gi|33404158|gb|CF209785.1|CF209785
genomic: TTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCCG AGATTAAATCCTAGGTTTCAAGGCGAGAACTTTGAAAAGAACAAGAACATA
genomic: TTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
tgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATATACACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCAC
aactgat putative branch site (score: 3)
ccttttgtcttatc putative PPT
atatgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATATACACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG