1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATATACACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCAC
species | Vitis vinifera |
transcript | Vv14s0030g01980.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGATAACTTTGAAAAGAACAAGAACATAEST: gi|110374962|gb|EC939911.1|EC939911
genomic: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGATAACTTTGAAAAGAACAAGAACATAEST: gi|77588053|gb|DV223238.1|DV223238
genomic: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG AGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
genomic: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
tgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATATACACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCAC
aactgat putative branch site (score: 3)
ccttttgtcttatc putative PPT
atatgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATATACACTAAAATGGAGATGTTGGCTGAAAAGCACAGATGCACCCCTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG