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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcatgggaaattatagccattcatttccaaatatttgtgatcctttgtaggtaataatggggatggcaggtggctgtattagtcatatagctgttgttggatgttctatcatattttgaacagtttgtatcggttgtatatgtagaagtgttaaatatcttttatttacattgattgatgtttctgtttcgacagCCAAGATCATTTGGATTTGCAGGCACAAAAGACAAACGCTCTGTATCTACACAAAGG

Basic information

species Vitis vinifera
transcript Vv14s0030g01840.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01840.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G459702_T03 (Zea mays), 3'ss of exon 4
gtaattcatgggaaattatagccattcatttccaaatatttgtgatcctttgtaggtaataatggggatggcaggtggctgtattagtcatatagctgttgt-tggatgttctatcatattttgaacagtttgtatcggttgtatatgtagaagtgttaaatatctt-ttatttacattgattgat-----gtttctgtttcgacagCCAAGATCATTTGGATTTGCAGGCACAAAAGACAAACGCTCTGTATCTACACAAAGG
                                                                                                 || || |  ||||| ||    ||    |  | ||   ||  ||| | | |  ||  |  | || | |||  | |  | ||||||||| |     || |   |||| |||||||||||| |||||||||||||| ||||| || |||||  ||||  | || |||  |
-------------------------------------------------------------------------------------------------gtagtctccatgttttacttcatca-aagtacttcacat--gttttctgttgagtcgc-tcaattttctcgtcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagaagtgttaaatatcttttatttacattgattgatgtttctgtttcgacagCCAAGATCATTTGGATTTGCAGGCACAAAAGACAAACGCTCTGTATCTACACAAAGG
                                gattgat  putative branch site (score: 4)
                                        tttctgtttc  CT-rich tract
          ttaaatatcttttatt  TA-rich tract