1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attttgactatcaagatgatctgcaatggcaggggaacatagttgcaatttaccctgcgtatagcattgacaactgaatcaacttttgcatatttgccagTCTATAGGTGCTGTTAATACTATTATGCGGAGGCCTAGTGATGGGAAGCTGATTGGTTATAATACAGATTGTGAGGCTTCCATAACTGCAATTGAGGATG
species | Vitis vinifera |
transcript | Vv14s0030g00670.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
caatttaccctgcgtatagcattgacaactgaatcaacttttgcatatttgccagTCTATAGGTGCTGTTAATACTATTATGCGGAGGCCTAGTGATGGGAAGCTGATTGGTTATAATACAGATTGTGAGGCTTCCATAACTGCAATTGAGGATG
cattgac putative branch site (score: 3)
atattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgactatcaagatgatctgcaatggcaggggaacatagttgcaatttaccctgcgtatagcattgacaactgaatcaacttttgcatatttgccagTCTATAGGTGCTGTTAATACTATTATGCGGAGGCCTAGTGATGGGAAGCTGATTGGTTATAATACAGATTGTGAGGCTTCCATAACTGCAATTGAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - -ctatcaa
- - - - - - - - - - ctgcaat
- - - - - - - - - - - - - -ggcaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca