Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcaaaataatcatttacttggatcaaataatcaactctctgcttaccaatgtgcttatatactgcctataacactgcagCTGATGATATGCTGTGGCTTTTCACTAATTTATTTTCTTGGAACTGTCATTTCCTGGCGTACCTTGGCCATAATTG

Basic information

species Vitis vinifera
transcript Vv14s0030g00250.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698937|gb|EE077003.1|EE077003
EST:     CAGAAATATCACCCAAGAGTCTTAGGGGAGGTTTTACATCAGTTTCTTCG                         CTGATGATATGCTGTGGCTTTTCACTAATTTATTTTCTTGGAACTGTCATT
genomic: CAGAAATATCACCCAAGAGTCTTAGGGGAGGTTTTACATCAGTTTCTTCGgtaaatcaaa ... aacactgcagCTGATGATATGCTGTGGCTTTTCACTAATTTATTTTCTTGGAACTGTCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaataatcaactctctgcttaccaatgtgcttatatactgcctataacactgcagCTGATGATATGCTGTGGCTTTTCACTAATTTATTTTCTTGGAACTGTCATTTCCTGGCGTACCTTGGCCATAATTG
                              ttatatact  TA-rich tract