Sequence
atgc intronic sequence ATGC exonic sequence...gagctgcttgtgactggttctgttcatgctgattgctgttcctatttagaatcaatttaaggtgttttccatgaattatagaatacttgtttgtttccagATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g45300.1 (Oryza sativa), 3'ss of exon 10
-------------------------------------------------------------------gagctgcttgtgactggttctgttcatgctgattgctgttcctatttagaatca---atttaaggt--gttttccatgaattata-gaatacttgtttgt------ttccagATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAG
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gtaagttaagatctgattttccttgattgctgattgttttttatcttgtacatatgtgactcggatcaagttatagatgttaaaatatgtcagctctaataaccatccgtttcattattcatgcatttaatgtttgctgtccagtgatattatgattggttaactataaaactttgcagATTGGACTCGATAAAAATGACCTTGACAAAGCTTTCATACAGCTTACGCTTGAATTCGTCACTAAACAG
upper sequence: Vv14s0030g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G111713_T02 (Zea mays), 3'ss of exon 8
----------------------------------------------------------------------gagctgcttgtgactggttctg----ttcatgctgattgctgttccta-tttagaatcaatttaaggtgttttcc--atgaattatag----aatacttgtttgtttccagATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAG
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gtaagctacttctgtttgactgtatatctgttccaatcttcaatagacgaattaacatactgtggtatgtgcggtgtacatgctaaatttttgaacttcaatataatctctctgataaatttatatttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagaatcaatttaaggtgttttccatgaattatagaatacttgtttgtttccagATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAG
tttgtttcc CT-rich tract
atgaattatagaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagctgcttgtgactggttctgttcatgctgattgctgttcctatttagaatcaatttaaggtgttttccatgaattatagaatacttgtttgtttccagATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAG
- - -gcttgtg
- - - - - - -ctggttc
- - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaatac