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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG

Basic information

species Vitis vinifera
transcript Vv14s0006g02720.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 5
----gtctgtc-atttgtt--gtagaccataagatcataatctttgtttatatcaaataaaagaaaat---atttataataaacccaa-gtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
    |||| |  ||| | |   | |    | |  |   ||| |    ||   | | | ||  |  | |   ||  |    ||||| ||   |||     ||| |||||| ||||| ||   ||| |  || ||||| |||||  | ||||||||||| ||||| |||||||| || ||||| |||||||| |||||||||||||||
gtgtgtctatagattcgattaattgtgttttaactaggaatgtacacttgcttaagaaaaccgctattgtcatccaacggaaacctaacacatgaaagatttgcagTGCAACAGCTCATGATGTTCGCACAATGATTATTGGCCGATTACTTGCTGGGATTGGTATTGGCATATCTTCTGCTCTTGTGCCCCTTTACATATCTGAG

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 5
gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
        | |||| |  || ||    |   ||  | |   ||||     | |    | ||     | | |  |  |   |  |    | |  || || ||||| ||   | | |  || ||||| |||||| |||| |||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||||
-------gtgtgttttgaactatttagttgcaacttgtaagtatacactgttatcttatatgaaactgacagtctgacacaaata---tctgtagCGCAACAGCTCAAGATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGGAATTGGTATTGGGATCTCATCTGCACTTGTACCCCTTTACATATCTGAG

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G153704_T03 (Zea mays), 3'ss of exon 5
gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
        | |||| |  || ||    |  |||  | |   | ||       |  |  |   ||| | |  |||  |   | |  || | | |||||| ||||| ||   | | |  || ||||| |||||  | || |||||||| ||||| || ||  |||||||||| ||||| || |||||||||||||||
-------gtgtgttttgaactatttagttgtaacttgtaagtgtac------actgttatcttttgtga--aactgacacacgggca-tatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 5
gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
||| |||| ||| | |  |  |||||||  || ||||| | ||| |         ||||      || ||||||      ||||   |     ||||| ||||| |||||||| ||| | ||||| |||||| | ||||||||||| || ||||||||  |  |||||||  | || ||||| ||||||||||||
gtcagtcagttggtcttcaggataagatttta-tctttttatattttt-------gaaatctgccattataaactatgacatgtctgc-----agTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 5
gtctgtcatttgttgtagaccataagatcataatctttgtttat--atcaaataaaagaaaatatttataataaacccaag-tatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
              ||| |   | |     ||| |  |   |||   | | |    |    || | | |||   |       | | || | |  | ||||| ||||| ||||||||||||||||||||  | ||  |  | || ||||| ||||||||||| |||||||| ||  |||| ||||||||||||||||||
--------------gtaaattttcaagcactaagccatacctattggtgagacgttaattgatttct-taacgcattggttctttttttattgattagTGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
                                           ttcacttttc  CT-rich tract
       aaataaaagaaaatat  TA-rich tract