Sequence
atgc intronic sequence ATGC exonic sequence...ttcaggagggcctaacacatgcctccatgttggatacactgctgtcttcaagttgactcaccaatttttttcctcctatttttgacggatgcaaaggcagGTATGTAGTTGATGCTGCTGATAGAGACAGTGTTCCTATATCTCGAAGTGAGCTACACAGCCTCTTGACAAAACCATCCTTGACTGGAATTCCTTTACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G39540.1 (Glycine max), 3'ss of exon 4
ttcaggagggcctaacacatgcctccatgttggatacactgctgtcttcaagttg-actcaccaatttttttcctcctatttttgacggatgcaaaggcagGTATGTAGTTGATGCTGCTGATAGAGACAGTGTTCCTATATCTCGAAGTGAGCTACACAGCCTCTTGACAAAACCATCCTTGACTGGAATTCCTTTACTT
|| ||| | || | | | | | | | || | || | | | |||| || | | |||| |||||||||| ||| ||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||| || ||||||||||| || |||| ||| |||||||| |||
ttgtagagtgt-tattatgtatagctctttcaagttattggaagtgtccattctccatgtttttacacttttgttcttttcgttgatggatgcaaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGGGATTCCTTTGCTT
upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 4
ttcaggagggcctaacacatgcctccatgttggatacactgctgtcttcaagttgactcacc--aatttttttcctcctatttttgacggatgcaaaggcagGTATGTAGTTGATGCTGCTGATAGAGACAGTGTTCCTATATCTCGAAGTGAGCTACACAGCCTCTTGACAAAACCATCCTTGACTGGAATTCCTTTACTT
|| |||| | || | || | | | || | || || | | || | |||| || | | |||| |||||| ||| ||| ||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||| || ||||||||||| || |||| || |||||||| |||
ttgtggagtgt-tattatatatagctctttcaaat-tattggaaatgtccattctccttgtttttacacttttgttcttttccttgatggatgctaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGCGATTCCTTTGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcaagttgactcaccaatttttttcctcctatttttgacggatgcaaaggcagGTATGTAGTTGATGCTGCTGATAGAGACAGTGTTCCTATATCTCGAAGTGAGCTACACAGCCTCTTGACAAAACCATCCTTGACTGGAATTCCTTTACTT
aattttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaggagggcctaacacatgcctccatgttggatacactgctgtcttcaagttgactcaccaatttttttcctcctatttttgacggatgcaaaggcagGTATGTAGTTGATGCTGCTGATAGAGACAGTGTTCCTATATCTCGAAGTGAGCTACACAGCCTCTTGACAAAACCATCCTTGACTGGAATTCCTTTACTT
- - - - - -ctaacac
- - - - - - - - - - gcctcca
- - - - - - - - - - - - - -tgttgga
- - - - - - - - - - - - - - - - - - -actgctg