1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttatgataactatttaaaataatgtgtgctgcagaaggattgtaaaaaatggttgtaggtgttagcatttgttcttaaatttcactatgtcattctcagGTTCTATCTGATGAGCTGAGTTGCGGCGTTGATGACATAATGAGTATTGAGTTGAATGTTTGTGATACACAACCTAGCTGTCTTGGAGGTGGAAACGACG
species | Vitis vinifera |
transcript | Vv13s0106g00700.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGTACCTCATTATCTTCAAAAACTGCTCATCATCCACTGCTTATGCAG GCTCTATCTGATGAGCTGAGTTGCAGCGTTGATGACATAATGAGTATTGAGEST: gi|161710142|gb|FC061040.1|FC061040
genomic: AAAGTACCTCATTATCTTCAAAAACTGCTCATCATCCACTGCTTATGCAGgtatcttttt ... tcattctcagGTTCTATCTGATGAGCTGAGTTGCGGCGTTGATGACATAATGAGTATTGAG
EST: AAAGTACCTCATTATCTTCAAAAACTGCTCATCATCCACTGCTTATGCAG GCTCTATCTGATGAGCTGAGTTGCAGCGTTGATGACATAATGAGTATTGAG
genomic: AAAGTACCTCATTATCTTCAAAAACTGCTCATCATCCACTGCTTATGCAGgtatcttttt ... tcattctcagGTTCTATCTGATGAGCTGAGTTGCGGCGTTGATGACATAATGAGTATTGAG
aaaaatggttgtaggtgttagcatttgttcttaaatttcactatgtcattctcagGTTCTATCTGATGAGCTGAGTTGCGGCGTTGATGACATAATGAGTATTGAGTTGAATGTTTGTGATACACAACCTAGCTGTCTTGGAGGTGGAAACGACG
tcattctc CT-rich tract
atttgttcttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatgataactatttaaaataatgtgtgctgcagaaggattgtaaaaaatggttgtaggtgttagcatttgttcttaaatttcactatgtcattctcagGTTCTATCTGATGAGCTGAGTTGCGGCGTTGATGACATAATGAGTATTGAGTTGAATGTTTGTGATACACAACCTAGCTGTCTTGGAGGTGGAAACGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - aaaataa
- - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - -agaagga
- - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactatg