1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttgtttgtttatattatgtttatttttatttatttattttgatttttaattttatttttagtctactctatttgactgaactttctgcatttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTATCTGGCCAGATGGATTAATTGAATTCACTACTCAATAATTTGGAAACAT
species | Vitis vinifera |
transcript | Vv13s0106g00620.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAG GTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTAEST: gi|110417947|gb|EC984052.1|EC984052
genomic: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAGgtaacaatca ... atttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTA
EST: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAG GTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTAEST: gi|110413185|gb|EC978962.1|EC978962
genomic: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAGgtaacaatca ... atttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTA
EST: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAG GTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTAEST: gi|349824783|gb|FQ414641.1|FQ414641
genomic: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAGgtaacaatca ... atttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTA
EST: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAG GTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGEST: gi|110426203|gb|EC992603.1|EC992603
genomic: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAGgtaacaatca ... atttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTG
EST: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAG GTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTA
genomic: TTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAGgtaacaatca ... atttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTA
ttttaattttatttttagtctactctatttgactgaactttctgcatttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTATCTGGCCAGATGGATTAATTGAATTCACTACTCAATAATTTGGAAACAT
ctttctgcattttt CT-rich tract
attttatttttagtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtttgtttatattatgtttatttttatttatttattttgatttttaattttatttttagtctactctatttgactgaactttctgcatttttacagGTCAAAGGTGTAGAGCAAGAATTAGATGCTGAAGATGAAGATGTTGCACTATCTGGCCAGATGGATTAATTGAATTCACTACTCAATAATTTGGAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgc