Sequence
atgc intronic sequence ATGC exonic sequencegtttggcatctaatattttaaattttgatgatatagtctatgttccaagtattttgcattatccagcagagacaacattagtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G37490.3 (Glycine max), 3'ss of exon 6
gtttggcatctaatattttaaattttgatgatatagtctatgttccaagtattttgcattatccagcagagacaacattagtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG
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gtttggcat--aacatcatgtctcttgatgttgtatttaatatatgatgttatcag----atcaagttgttatcaaatgtg-acaaaaacatacccaacctcaatttagctttcttgta--tgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAG
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G26610.1 (Glycine max), 3'ss of exon 6
gtttggcatctaatattttaaattttgatgatatagtctatgttccaagtattttgcattatccagcagagacaacattagtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG
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gtttggcat--gacatcatctctcttaatgttgtatttaatat---atgttgttatcag-atcaagttgtaatcacatatg-acaaacatacccaacctgaattt--acctttcttgt--ttgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTATACATTACACTTACGGATGTGACTACAATATGAAG
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 3'ss of exon 6
----------gtttggcatctaatattttaaattttgatgatatagtctatgttccaagtattttgcattatccagcagagacaacattagtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG
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gtaagaatcgaccttgtg-ctgataccttag----tgataacatattctatgtcgaagatacttt----tgttttgtcaaagttacaaaagt-tgtttctctgctccatattcct-aagttctctcacaatatc----tttcagCCTCCGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128013|gb|CB913352.1|CB913352EST: CTGCCTTGCATGGCGTGCAGCATATTCTTCAGAAGGACTTTATGTTGCAG CCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTAT
genomic: CTGCCTTGCATGGCGTGCAGCATATTCTTCAGAAGGACTTTATGTTGCAGgtttggcatc ... aaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG
ttttc CT-rich tract
ttgtaattttaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggcatctaatattttaaattttgatgatatagtctatgttccaagtattttgcattatccagcagagacaacattagtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT