Sequence
atgc intronic sequence ATGC exonic sequencegtatctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctgaatatatgtttatttttccatgtgtagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G25890.1 (Glycine max), 3'ss of exon 5
-gtatctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctgaatatatgtttatttttccatgtg------tagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
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agtgcttttgtcagattttttcttttccaatttataacatgcgatttgtatttctctt-ttttttcttattcttttctctcttttttgtatactttaatagGGGATTGTGACATCAAGCATATCATACTATGTACAAGGACTGGTAATTAAGATGAAAGGACCTGTCTTTGCAACTGCCTTTAGCCCTTTAATGATGATCA
upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G36200.1 (Glycine max), 3'ss of exon 5
------gtatctctctctctctc-tctctctctctctctctctctctctctctctctctctctcgctctctctgaatatatgtttatttttccatgtgtagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
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tttgttgtaaagtactttgtcaagtttctttttcaatttgtaacatgggatttgtatttctctt-ttttctttctttttttttttggtatactgtaattagGGGATTGTGACATCAAGCATATCATACTATGTACAAGGACTGGTAATTAAGATGAAAGGACCTGTCTTTGCAACTGCCTTTAGCCCTTTAATGATGATCA
upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G15590.1 (Glycine max), 3'ss of exon 5
---------gtatctctctctctc-tctctctctctctctctctctctctctctctctctctctctcgctctctctgaatatatgtttatttttccatgtgtagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
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gtaagaataagatcattaactatagtttcttcttccatttaattaattattaagggcgctttctctaatagtatgttagtataatatctgtgtactgcat-tagGGGATTGTTACATCAAGCATATCATACTATGTCCAAGGATTGGTAATTAAGAAGAAAGGTCCTGTTTTCGCAACTGCATTTAGCCCTCTGATGATGATCA
upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G46740.1 (Glycine max), 3'ss of exon 5
--------gtatctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctgaatata-tgtttatttttccatgtgt--------------agGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
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gtaagaatacgatcattattttttttcttccatttaattaattattaattatggggctctttctaatagtatgttagtaaaatgattattttaatatttgtgtattaattgtattagGGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAGAAGAAAGGGCCTGTTTTCGCAACTGCATTTAGCCCTCTGATGATGATCA
upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G07050.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatctctctctctctctctctctctctctc-tctctctctctctctctctctctctcgctctctctgaatatatgtttatttttccatgtgtagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
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gtaatattaaacctctct-tatctagctctcatgtatataaagtcacatatatttatttacttatcccgata---atttgatatataata-atagGGGATTGTGGCATCAAGTATCTCATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAGTCCTTTGATGATGGTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctctctctctctctcgctctctctgaatatatgtttatttttccatgtgtagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
tttatttttcc CT-rich tract
tctgaatatatgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctgaatatatgtttatttttccatgtgtagGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG