Sequence
atgc intronic sequence ATGC exonic sequencegtatggtttattacccatatgagaacatgcttcatcccaaaacattttgtaggaaagccttcttagttgtttctatatggacctgattgtaaacgctaaatcaatatacttctagGTGAAAAATGAGTTGCCCAGTACTTTCAAAGCCTACCGCTATCAGCAGCATAGGTGGTCTTGTGGTCCTGCTAATCTCTTCAAGAAAATGGCAATAGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G34550.1 (Glycine max), 3'ss of exon 7
---------------------------------------------------gtatggtttattacccatatgagaacatgct--------tcatcccaaaacattttgtaggaaagccttcttagttgttt----ctatatggacctgattgta--------------aacgctaaatcaatatacttctagGTGAAAAATGAGTTGCCCAGTACTTTCAAAGCCTACCGCTATCAGCAGCATAGGTGGTCTTGTGGTCCTGCTAATCTCTTCAAGAAAATGGCAATAGAAA
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gtatcaccgaaccacactgcatttagtttcatggtttatactcaggagtttgttcaatgagttatttagaaaagaagattgtacaaaaagtaatttcagttatatatacatcaagtttctgttgagtcttttctcctatactgagttgtttatttcatataacaatttatcactttatctaaataaatttagGTGAAAAGTGAATTGCCAAGTACCTTCAAAGCCTATCGTTATCAGCAGCACAGGTGGTCATGTGGCCCAGCTAATCTTTTCAAGAAAATGGCAATGGAAA
upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G32990.1 (Glycine max), 3'ss of exon 5
-----------------------------------------------------gtatggtttattacccatatgaga---------acatgcttca-tcccaaaacattttgtaggaaagccttctt----------agttgtttctatatggacctgattgtaaacgctaaatcaatatacttctagGTGAAAAATGAGTTGCCCAGTACTTTCAAAGCCTACCGCTATCAGCAGCATAGGTGGTCTTGTGGTCCTGCTAATCTCTTCAAGAAAATGGCAATAGAAA
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gtatcactgaaacacgctgcgcatttagtttcactgtttatactcaggagtttgttcaatgagttacttagaaaagattgcacaaaaagtatttcagttatacatcaagtttctgttgagtcttttctcctatactgagttgtttatttcatataacaatttttaactttatgtaaataaattt--agGTGAAAAGTGAATTGCCAAGTACCTTCAAAGCCTATCGTTATCAGCAGCACAGGTGGTCATGTGGCCCAGCTAATCTTTTCAAGAAAATGGCAATGGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttagttgtttctatatggacctgattgtaaacgctaaatcaatatacttctagGTGAAAAATGAGTTGCCCAGTACTTTCAAAGCCTACCGCTATCAGCAGCATAGGTGGTCTTGTGGTCCTGCTAATCTCTTCAAGAAAATGGCAATAGAAA
cgctaaa putative branch site (score: 3)
tacttct putative PPT
taaatcaatatactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggtttattacccatatgagaacatgcttcatcccaaaacattttgtaggaaagccttcttagttgtttctatatggacctgattgtaaacgctaaatcaatatacttctagGTGAAAAATGAGTTGCCCAGTACTTTCAAAGCCTACCGCTATCAGCAGCATAGGTGGTCTTGTGGTCCTGCTAATCTCTTCAAGAAAATGGCAATAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA