1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtcctgtgtgggaactttaggatttgaagaaacttattttccaaatggcgaaaaactttgttctaccataatgagaaacttctttatctaactttcagGTATTTAATGAGTCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATTTCACCTGAAAAGACAGAG
species | Vitis vinifera |
transcript | Vv13s0073g00160.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGAAGCAGATTAAATCAGCATTCTATTCGCTTTCCAAG GTATTTAATGAATCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATTEST: gi|34416267|gb|CF415021.1|CF415021
genomic: AGTGAAGCAGATTAAATCAGCATTCTATTCGCTTTCCAAGgttgtatgaa ... taactttcagGTATTTAATGAGTCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATT
EST: AGTGAAGCAGATTAAATCAGCATTCTATTCGCTTTCCAAG GTATTTAATGAATCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATTEST: gi|71869824|gb|DT018879.1|DT018879
genomic: AGTGAAGCAGATTAAATCAGCATTCTATTCGCTTTCCAAGgttgtatgaa ... taactttcagGTATTTAATGAGTCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATT
EST: AGTGAAGCAGATTAAATCAGCATTCTATTCGCTTTCCAAG GTATTTAATGAATCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATT
genomic: AGTGAAGCAGATTAAATCAGCATTCTATTCGCTTTCCAAGgttgtatgaa ... taactttcagGTATTTAATGAGTCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATT
aatggcgaaaaactttgttctaccataatgagaaacttctttatctaactttcagGTATTTAATGAGTCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATTTCACCTGAAAAGACAGAG
atctaac putative branch site (score: 2)
cttctttatct CT-rich tract
aaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcctgtgtgggaactttaggatttgaagaaacttattttccaaatggcgaaaaactttgttctaccataatgagaaacttctttatctaactttcagGTATTTAATGAGTCAAAAATTGTGGAATACAGCATCAAAGAAAATCTAATTTCACCTGAAAAGACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -gtgtggg
- - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - ccaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - cgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaga