Sequence
atgc intronic sequence ATGC exonic sequencegtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcagATGTTTGGAAGAAGGAGCAGAAGATTTCTTTCTGAAACCTGTTCAGTTATCAGATGTGAACAAGCTTAGGCCACATCTACTCGGATCCAGAACCCTTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G37770.1 (Glycine max), 3'ss of exon 4
gtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcagATGTTTGGAAGAAGGAGCAGAAGATTTCTTTCTGAAACCTGTTCAGTTATCAGATGTGAACAAGCTTAGGCCACATCTACTCGGATCCAGAACCCTTTTG
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--------ttttttttttcttttcaaaatttcaaataa--attttagggggcattacatgcc-taaatttcatatttgactt-acatgacattttttttttttttgtatcagATGCTTGGAAGAGGGAGCAGAAGAGTTCTTTCTGAAACCAGTTCAACAGGCAGATGTGAACAAGCTGAAGCCACATTTGATGAAATCAAGAGCAAAGGAA
upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G26770.1 (Glycine max), 3'ss of exon 4
gtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattg-atcagATGTTTGGAAGAAGGAGCAGAAGATTTCTTTCTGAAACCTGTTCAGTTATCAGATGTGAACAAGCTTAGGCCACATCTACTCGGATCCAGAACCCTTTTG
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---------cttttttattcttccaaatttcaaatat---atattagggagcatcacatt-gctaaaatttatatttcactaacatatctttattttattttatttgtatcagATGCTTGGAAGAGGGTGCAGAAGAATTCTTTCTGAAACCAGTTCAACAGGCAGATGTGAACAAGCTGAAACCTCACTTGATGAAATCAAGAGCTAAGGAA
upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G21650.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------gtgagaaa--actactta--aggattctggaattgaattttctcatccaaaagaaaatgaaatttagt--tgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcagATGTTTGGAAGAAGGAGCAGAAGATTTCTTTCTGAAACCTGTTCAGTTATCAGATGTGAACAAGCTTAGGCCACATCTACTCGGATCCAGAACCCTTTTG
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gtgaggaaaattacctccaattatatcaggaatccaatacaataaaaaaattattagagacccaaaataaaaaatgatcatttatgagggatccaaaacatattttagccaattcaaa-aatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgt-accagATGCCTAGAAGAGGGAGCTGATGAATTCTTTCTGAAACCAGTTCAACAGTCAGATGTAAACAAGCTGAGGCCACATTTGATGAAATCAAAAGTTAAGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcagATGTTTGGAAGAAGGAGCAGAAGATTTCTTTCTGAAACCTGTTCAGTTATCAGATGTGAACAAGCTTAGGCCACATCTACTCGGATCCAGAACCCTTTTG
aatgtatgtttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcagATGTTTGGAAGAAGGAGCAGAAGATTTCTTTCTGAAACCTGTTCAGTTATCAGATGTGAACAAGCTTAGGCCACATCTACTCGGATCCAGAACCCTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT