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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactccaattttttttttttcctttgccagTTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAG

Basic information

species Vitis vinifera
transcript Vv13s0067g03330.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G28970.1 (Glycine max), 3'ss of exon 6
------------------------------------gtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactccaatttttttt-ttttcctttgccagTTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAG
                                    ||   |    |||   |||   |   |    |  | | || |||||    ||| | |  | | |   ||   |||  ||||||||||| ||| ||||||||||||||| | ||||||||||||| || |||||||| |||||||||
gtacagttttgtgctgcattttgtgtgtgatctttggtgaattgtttctattttatttttttggcatctgtgg-attcttttgcaaatgatcaaactattaaattggatttctctttgccagTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAG

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G21600.1 (Glycine max), 3'ss of exon 4
------------------------------------gtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactccaattt-tttttttttcctttgccagTTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAG
                                     |   |    |||   |||   |  |||  | ||  | || |||||    ||| | |  | | |   ||   |||  ||||| ||||| ||| ||||||||||||||| | ||||||||||||| || |||||||| |||||||||
gtacagttttatgccgcattttgtgtgtgatctttcatgaat-tgttctattttattttttggc--atctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcagTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttagtatgcttttcttgatgctaactccaattttttttttttcctttgccagTTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAG
                     tgctaac  putative branch site (score: 1)
                           ctccaatttttttttt  CT-rich tract
                        taactccaattttttt  TA-rich tract