Sequence
atgc intronic sequence ATGC exonic sequence...attggtggtgttaatgactatatttattggaaatgtttgagctttcttagtttattttcttctgcatgtatttgagtcaatttctgttttactttttcagGATGATATGCCAAAGCCTGGTCAAGCCCCTCGTCCTGCTGGAGGAGCTCCTGTTCGCACCTGATAAAACGAAGTTGATTTCCTCTGTCATTCTGCTTTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G39940.1 (Glycine max), 3'ss of exon 4
---attggtggtgttaatgactatatttattggaaatgtttgagctttcttagtttattttcttctgcatgtatttgagtcaatttctgttttactttttcagGATGATATGCCAA---------AGCCTGGTCAAGCCCCTCGTCCTGCTGG---AGGAGCTCCTGTTCGCACCTGATAAAACGAAGTTGATTTCCTCTGTCATTCTGCTTTCA
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gagattgctatattttgtgtggatagactctgattatctgcatataaaattgttttatggtaacactcttgt--ttga-tgagtttattgatctctttgccagGATGATGCACCAAGGCCTGGTCAGCCTGGTCAAGCCCCACGTCCTGCTGGAGTAGGAGCTCCTGCCCGAGCTTAAAAGAA-AATTCCAAGTTTTTGGGGCT-----------
upper sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 4
-attggtggtgttaatgactatatttattggaaatgtttgagctttcttagtttat-tttcttctgcatgtatttgagtcaatttctgttttactttttcagGATGATATGCCAA---------AGCCTGGTCAAGCCCCTCGTCCTGCTGG---AGGAGCTCCTGTTCGCACCTGATAAAACGAAGTTGATTTCCTCTGTCATTCTGCTTTCA
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gattacta-tatttgtggggatagactctgattatctgcatataaaattgttttatgtaacacctgctcttgtttga-tgagtttattgatctctttgccagGATGATGCACCAAGGCCTGGTCAGCCTGGTCAAGCCCCACGTCCTGCTGGAGTAGGAGCTCCTGCCCGAACTTAAAAAACAAATTCCAAAGTTTTTTGGG------------
upper sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 4
---attggtggtgttaatgac-tatatttattggaaatgtttgagctttcttagtttattttcttctgcatgtatttgagtcaatttctgttttactttttcagGATGATATGCCAA---------AGCCTGGTCAAGCCCCTCGTCCTGCTGG---AGGAGCTCCTGTTCGCACCTGA---TAAAACGAAGTTGATTTCCTCTGTCATTCTGCTTTCA
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ataaactgtggttatatggatataaacttgttagcaataattgaa--taattgttttattttatgtatcttgt--ttgatgaagtttatttgtctcgttgccagGATGATGCACAAAGGCCTGGTCAGCCTGGTCAAGCTCCTCGTCCTGCTGGCACAGGAGCACCTGTTCGAACCTAAAAGCAAATCCTAAGAAAAAGCCTTG--------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttagtttattttcttctgcatgtatttgagtcaatttctgttttactttttcagGATGATATGCCAAAGCCTGGTCAAGCCCCTCGTCCTGCTGGAGGAGCTCCTGTTCGCACCTGATAAAACGAAGTTGATTTCCTCTGTCATTCTGCTTTCA
tttctgttttactttt CT-rich tract
tttattttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attggtggtgttaatgactatatttattggaaatgtttgagctttcttagtttattttcttctgcatgtatttgagtcaatttctgttttactttttcagGATGATATGCCAAAGCCTGGTCAAGCCCCTCGTCCTGCTGGAGGAGCTCCTGTTCGCACCTGATAAAACGAAGTTGATTTCCTCTGTCATTCTGCTTTCA
- -ggtggtg
- - - - - - - - - - - - -attggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta