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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttcaggaacctgtagccttattcccaaattgttgttgttattatagctgctgcctctaatgtcatccatttttgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGGCAACTCACAGAATTGGCCTGTCTCGTGGCCCCAGAGGCTTAGCAGCAAA

Basic information

species Vitis vinifera
transcript Vv13s0067g01690.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717569|gb|FC067880.1|FC067880
EST:     GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATG                         GTACGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
genomic: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttca ... tgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
EST: gi|110691233|gb|EE069103.1|EE069103
EST:     GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATG                         GTACGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
genomic: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttca ... tgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
EST: gi|30255679|gb|CB971811.1|CB971811
EST:     GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATG                         GTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
genomic: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttca ... tgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttgttgttattatagctgctgcctctaatgtcatccatttttgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGGCAACTCACAGAATTGGCCTGTCTCGTGGCCCCAGAGGCTTAGCAGCAAA
                          ctctaat  putative branch site (score: 3)
                                     tccattttt  putative PPT
                                        atttttgtatttta  TA-rich tract