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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcatttactaacatatgacttaagtactttaaccttctttcattgtgagatttgattgaatatgcatgccaaatttttgggtattacattgacatcagttaccttgcagTAATGTTGTGGCTGCTACAGACTTAACCCTCTTGGCTTTAGCAGGGATTGGATTACGCCACAGGAAG

Basic information

species Vitis vinifera
transcript Vv13s0067g01470.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G35520.1 (Glycine max), 3'ss of exon 5
gttagcatttactaacatatgacttaagtactttaaccttctttcattgtgagatttgattgaatatgcatgccaaatttttgggtattacattgacatcagttaccttgcagTAATGTTGTGGCTGCTACAGACTTAACCCTCTTGGCTTTAGCAGGGATTGGATTACGCCACAGGAAG
||  |   ||| | |   ||   |  ||   ||     || || | ||      ||  | |  | |  | | |    ||  | |||     | | | |   || |||||||||||| || ||||| |||||||| ||||||||| | || |||||||||||||| ||||| ||  | |||
gtctgttgtta-tgattgatatttcgagggtttgcttatttttccgtt------ttctagtagagaaacttactt--ttactaggtg----actcatactggtgaccttgcagTAACGTGGTGGCAGCTACAGATTTAACCCTCCTAGCCTTAGCAGGGATTGGTTTACGTCAAGGAAAG

upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G02900.1 (Glycine max), 3'ss of exon 5
gttagcatttactaacatatgacttaagtactttaaccttctttcattgtgagatttgattgaatatgcatgccaaatttttgggtattacattgacatcagttaccttgcagTAATGTTGTGGCTGCTACAGACTTAACCCTCTTGGCTTTAGCAGGGATTGGATTACGCCACAGGAAG
       | |  |    ||||| | |  |   |     ||  ||  |||| || |||     | ||   |  |    ||||      | ||  ||| |   || ||||||||||||||| ||||| || ||||| ||||||||| | || ||||| |||||||| ||||| ||  | |||
------gtctgttgt--tatgattgatatttctagggtttgctt--ttgttagtttt---ctagtagagaaacttgcttttacaaggtgac--tgatactggtgaccttgcagTAATGTGGTGGCAGCCACAGATTTAACCCTCCTAGCCTTAGCTGGGATTGGCTTACGTCAAGGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaatatgcatgccaaatttttgggtattacattgacatcagttaccttgcagTAATGTTGTGGCTGCTACAGACTTAACCCTCTTGGCTTTAGCAGGGATTGGATTACGCCACAGGAAG
                                cattgac  putative branch site (score: 3)
                                            ttacctt  putative PPT
                aaattttt  TA-rich tract