1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggttcatttcaacttcatgatttcttagtgctttctggaggttctactgttcttgtttattagatgcaaggcttatacttatggcttctttgcaaaccagATGTGTGATTTGCCAGATGGGGTATAAAAGAGGGGACCGTCAAATAAAATTACCCTGCAAGCATGTCTATCACACAGACTGTGGCACGAAATGGCTTACC
species | Vitis vinifera |
transcript | Vv13s0064g01030.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
actgttcttgtttattagatgcaaggcttatacttatggcttctttgcaaaccagATGTGTGATTTGCCAGATGGGGTATAAAAGAGGGGACCGTCAAATAAAATTACCCTGCAAGCATGTCTATCACACAGACTGTGGCACGAAATGGCTTACC
cttctttgc CT-rich tract
ttgtttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcatttcaacttcatgatttcttagtgctttctggaggttctactgttcttgtttattagatgcaaggcttatacttatggcttctttgcaaaccagATGTGTGATTTGCCAGATGGGGTATAAAAGAGGGGACCGTCAAATAAAATTACCCTGCAAGCATGTCTATCACACAGACTGTGGCACGAAATGGCTTACC
- - - - -caacttc
- - - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatggct