Sequence
atgc intronic sequence ATGC exonic sequence...tttacaaattcttgttgctgaaaccctggctggggaagaaaattaagatgctggtatgattgacaaactcccattccttgatatgatgtttgtttatcagATTGAACCTGGTGGCCAGACTGAGCAAGCACCTCCATCAGCTGTGTTTCAATTGCGTCCTGAGGATATGCATGGTTTCAGATTCCTGACCATCTCAGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G24220.2 (Glycine max), 3'ss of exon 9
----------------------------------------------------tttacaa-attcttgttgctgaaaccct---ggctggggaagaaaattaagatgctggtatgattgacaaactcccattccttgatatgatgtttgtttatcagATTGAACCTGGTGGCCAGACTGAGCAAGCACCTCCATCAGCTGTGTTTCAATTGCGTCCTGAGGATATGCATGGTTTCAGATTCCTGACCATCTCAGTGG
| ||| | ||| ||| ||| | | | | | ||| | | | | || |||| | | || || || | | | || ||| |||||||||| | |||||||||||||| |||||||| ||||| ||| ||| ||||||| ||||||||||| |||||||| || || ||||||| |
gtatatcatgcctatttccagaccatccttctttcttgtttggattatctgttatactacattaccattgttgagttctttaagatagtcttaagaaaatgcttaattaattttatatgggtactcataatatttaatctgcaatat-tataacagCTTGAACCTGGCAGTCAGACTGAGCAAGCTCCTCCATCTGCTGTATTTTGGTTGAGTCCTGAAGATATGCATGGCTTCAGATTTCTTACTGTCTCAGTTG
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G06860.1 (Glycine max), 3'ss of exon 9
------------------------------------------------------------tttacaaattcttgttgctgaaaccctggctggggaagaaaattaagatgctggtatgattgacaaactcccattccttgatatgatgtttgtttatcagATTGAACCTGGTGGCCAGACTGAGCAAGCACCTCCATCAGCTGTGTTTCAATTGCGTCCTGAGGATATGCATGGTTTCAGATTCCTGACCATCTCAGTGG
|||| | | | | ||| || | ||| |||||| | || | || | || |||| | | || || || | | || ||| |||||||||| | |||||||||||||| || ||||| ||||| ||| ||| ||||||| ||||||||||| |||||||| || || ||||||| |
gtatattatgcctctttccagacaattcttctttcttgttttgattatctttaatactacattactattgttgagttctgtaagatagtctgaggaagatgttcaa----ttagttttatatgggtactcataatatttaatctgcaacat-tataacagCTTGAACCTGGCAGTCAGACTGAGCAAGCTCCACCATCTGCTGTATTTTGGTTGGGTCCTGAAGATATGCATGGCTTCAGATTTCTTACTGTCTCAGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agatgctggtatgattgacaaactcccattccttgatatgatgtttgtttatcagATTGAACCTGGTGGCCAGACTGAGCAAGCACCTCCATCAGCTGTGTTTCAATTGCGTCCTGAGGATATGCATGGTTTCAGATTCCTGACCATCTCAGTGG
tttgttt CT-rich tract
tttgtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttacaaattcttgttgctgaaaccctggctggggaagaaaattaagatgctggtatgattgacaaactcccattccttgatatgatgtttgtttatcagATTGAACCTGGTGGCCAGACTGAGCAAGCACCTCCATCAGCTGTGTTTCAATTGCGTCCTGAGGATATGCATGGTTTCAGATTCCTGACCATCTCAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- -acaaatt
- - - - - - tgttgct
- - - - - - - - - - - -ccctggc
- - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - gatgctg