Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattagtatttagatttttttatcacacaagttacaaccactgtaaaaaaagaaactgctaattggtgccttcctctaaataaactgtggtttaaatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA

Basic information

species Vitis vinifera
transcript Vv13s0019g05250.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G33380.1 (Glycine max), 3'ss of exon 7
gtactattagtatttagatttttttatcacacaagttacaaccactgtaaaaaaagaaactgctaattggtgccttcctctaaataaactgtggtttaaatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA
             | | ||  |  |   |   ||   | |   | ||            |||||||   |    |   | |||  | | | |   ||   ||  |||||||| |||| | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||
------------gtaaaatgataatgaaatttaaaccatacttattgcttt--------ctgctaaagtgaagttaattataatgacattataccttttgtacaacagGGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G34150.3 (Glycine max), 3'ss of exon 5
gtactattagtatttagatttttttatcacacaagttacaaccactgtaaaaaaagaaactgctaattggtgccttcctctaaataaactgtggtttaaatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA
             | | |   |  |   |   || | | |   | ||            | |||||   ||   |   | ||   | | | |   ||   ||  |||||||| |||  | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||
------------gtaaaacgataatcagatttaaatcatatttattgcttt--------ccgctaaagtgtagttaattatactgacattataccttttgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728729|gb|EE104550.1|EE104550
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|34550427|gb|CF518645.1|CF518645
EST:     TTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|351028003|gb|FQ425904.1|FQ425904
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|32249928|gb|CD715747.1|CD715747
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|30137894|gb|CB923232.1|CB923232
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|27578522|gb|CB001217.1|CB001217
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|37190333|gb|CF609682.1|CF609682
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|110392317|gb|EC957652.1|EC957652
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|18458011|gb|BM436289.1|BM436289
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
EST: gi|29785366|gb|CB342287.2|CB342287
EST:     TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAG                         GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG
genomic: TGGAACGAGCAGACTTATTAGATATAAATGGGCAGATTTTTGCTGAACAGgtactattag ... aatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaactgctaattggtgccttcctctaaataaactgtggtttaaatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA
                                         tttaaatattaca  TA-rich tract