1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcatattgctataaaaaagtcatggattcctgtaacataattaaaatatgatgaataagagttctttaaatatacatttgaaattgaaagggcctttctaaagccagttgaaatgctatttcttttcagGGGATTTTGCTCAAAAGCTTTCACATCCATCATCCAAGCTATCAAAGGA
species | Vitis vinifera |
transcript | Vv13s0019g04740.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATG GGGATTTTGCTCAAAAGCTTTCGCATCCATCGTCCAAGCTATCAAAGGAEST: gi|110701324|gb|EE078768.1|EE078768
genomic: GGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATGgtatgcatat ... ttcttttcagGGGATTTTGCTCAAAAGCTTTCACATCCATCATCCAAGCTATCAAAGGA
EST: GGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATG GGGATTTTGCTCAAAAGCTTTCGCATCCATCGTCCAAGCTATCAAAGGAEST: gi|161715781|gb|FC065148.1|FC065148
genomic: GGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATGgtatgcatat ... ttcttttcagGGGATTTTGCTCAAAAGCTTTCACATCCATCATCCAAGCTATCAAAGGA
EST: GGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATG GGGATTTTGCTCAAAAGCTTTCACATCCATCGTCCAAGCTATCAAAGGA
genomic: GGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATGgtatgcatat ... ttcttttcagGGGATTTTGCTCAAAAGCTTTCACATCCATCATCCAAGCTATCAAAGGA
catttgaaattgaaagggcctttctaaagccagttgaaatgctatttcttttcagGGGATTTTGCTCAAAAGCTTTCACATCCATCATCCAAGCTATCAAAGGA
ttctaaa putative branch site (score: 2)
tgctatttcttttc putative PPT
tatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatattgctataaaaaagtcatggattcctgtaacataattaaaatatgatgaataagagttctttaaatatacatttgaaattgaaagggcctttctaaagccagttgaaatgctatttcttttcagGGGATTTTGCTCAAAAGCTTTCACATCCATCATCCAAGCTATCAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT