Sequence
atgc intronic sequence ATGC exonic sequencegtaggcttgtgaattttcaacatgggatgcacatggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G35270.2 (Glycine max), 3'ss of exon 5
gtaggcttgtgaattttcaacatgggatgcacatggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG----
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gtgggtttctag---ttgaatatacaccactgaaatactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGGTCT
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G35270.1 (Glycine max), 3'ss of exon 5
gtaggcttgtgaattttcaacatgggatgcacatggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG
|| || || | || || || | | | || | | | | || ||| || | || | ||||||| |||||||||||||||| || ||| |||| |||| | ||| |||||||| |||||||| |||||||||||| |||| | |||||||||||||| |||
gtgggtttctag---ttgaatatacaccactgaaatactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G32280.1 (Glycine max), 3'ss of exon 5
gtaggcttgtgaattttcaac---atgggatgcacatggatgtttcttgtgtagttatcaat-gaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG
||| |||||| ||| | ||| || | | || |||| | | | || | || | ||||||| ||||||||||||||||| ||| ||| |||| |||| | || |||||||||||||| || |||||||||||| |||| | ||||| || ||||| |||
--------gtgggttttcagttgaatgtattccactaaaataccatgtctttatttatttcttggagatgtcattttgtgccttttttcccagTATTATGAAGGAAATCGTGCAAAATGGTTGGCTATGAGGTCTGGGCAGAGCTACCGGCATCCATTCAACATTGGCGCATACAAGAACATTACTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG
tctttttttcc CT-rich tract
tcttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggcttgtgaattttcaacatgggatgcacatggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT