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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatccaagaaacttaatgagtacgctatttatacattctgaattgttacttaaattgttttacttgcattttcagTTTTTTGAGCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTA

Basic information

species Vitis vinifera
transcript Vv13s0019g04640.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G32230.1 (Glycine max), 3'ss of exon 7
---------------------gtatatccaagaaacttaatgagtacgctatttatacattctgaattgttactt----aaat---tgttttacttgcat--tttcagTTTTTTGAGCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTA
                     | ||| |  || |   | || | || ||| ||| |   |  ||  || ||  ||    ||||   || || || |||    || ||||||||||||||||| ||||| ||||||||| ||| | |||||||  ||||||| || ||| |||| || || ||||| |||||||||||||||||||| |
gtataattagcttgtacaactgaata-ctgagtactgtcataaatatgctcttttt---tattgggttattgatttaagaaattcatgcttgacatgctctattgcagTTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA

upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G35290.1 (Glycine max), 3'ss of exon 7
-------------------gtatatccaagaaactta-atgagtacgctatttatacattctgaattgttacttaaat----tgttttacttgcat--tttcagTTTTTTGAGCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTA
                    |  || |     ||| | |  | ||  || ||| |   ||     ||| |     |||    || || || |||    || ||||||||||||||||| || |||||||||||| ||| | ||||||   ||||||| || ||| |||| || || ||||| |||||||||||||||||||| |
gtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgctatttatacattctgaattgttacttaaattgttttacttgcattttcagTTTTTTGAGCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTA
                                              cattttc  CT-rich tract
                    aattgttacttaaatt  TA-rich tract