Sequence
atgc intronic sequence ATGC exonic sequencegtacttgtttagctaattgcagcttttttttctttgttaggcatgtttttgttcacaagacagttttgacatttgaaaatttaaatttccaattaaggtattcctattatcatttttcttgtggtatttcagGCATTATTGCAGGATGGGTTCTACATCTGAGAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G21570.1 (Glycine max), 3'ss of exon 2
gtacttgtttagctaattgcagcttttttttctttgttaggcatgtttttgttcacaagacagttttgacatttgaaaatttaaatttccaattaaggtattcctattatcatttttcttgtggtatttcagGCATTATTGCAGGATGGGTTCTACATCTGAGAAAA
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------------ataagtatactattatgttcttt----------tgatggtaataaaaacaattatgctccct------ttgtgttcattatcctgatacttcgaa----acttctcccttgttatttcagGCATTACTGCAGGATGGGTTCTACATCTGAGCAAA
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G32210.1 (Glycine max), 3'ss of exon 5
gtacttgtttagctaattgcagcttttttttctttgttaggcatgtttttgttcacaagacagttttgacatttgaaaatttaaatttccaattaaggtattcctattatcatttttcttgtggtatttcagGCATTATTGCAGGATGGGTTCTACATCTGAGAAAA
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-tagtcagccaaaagatgatcaatttagttactttcttag---tatacttgtt----agattgtttcattattaggaagtttc-----------------------ttaacattttctct-tgaaatttcagGCATTATTGCAGGATGGGCTCCACATCTGAGAAAA
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G35310.2 (Glycine max), 3'ss of exon 5
gtacttgtttagctaattgcagcttttttttctttgttaggcatgtttttgttcacaagacagttttgacatttgaaaatttaaatttccaattaaggtattcctattatcatttttcttgtggtatttcagGCATTATTGCAGGATGGGTTCTACATCTGAGAAAA
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-tagccggccaaaagatgacaaatttagttaatttcttag---tatacttgtt----atattgtttcattattgggaagtttc-----------------------ttaacattttctct-tgaaatttcagGCATTACTGCAGGATGGGCTCCACATCTGAGAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttaaatttccaattaaggtattcctattatcatttttcttgtggtatttcagGCATTATTGCAGGATGGGTTCTACATCTGAGAAAA
tattatcatttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttgtttagctaattgcagcttttttttctttgttaggcatgtttttgttcacaagacagttttgacatttgaaaatttaaatttccaattaaggtattcctattatcatttttcttgtggtatttcagGCATTATTGCAGGATGGGTTCTACATCTGAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG