1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cattttattttatttttttaactaagtgagaggcaatgttaaaggcttgtaccttgcagaaaattgaaattttgagaggttgccaattttctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGATATCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCT
species | Vitis vinifera |
transcript | Vv13s0019g04310.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|351038272|gb|FQ460964.1|FQ460964
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|351046934|gb|FQ454544.1|FQ454544
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|45771650|gb|CN007502.1|CN007502
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: AAAAAGAGATCAG- GAAATCTCAT-GCATCGACTCGATGACC-TCAGCCAGTAAGTGGTGATGTGEST: gi|349809523|gb|FQ414413.1|FQ414413
genomic: AAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|351038723|gb|FQ464589.1|FQ464589
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|110366533|gb|EC930443.1|EC930443
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|349809479|gb|FQ414369.1|FQ414369
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|349811587|gb|FQ409583.1|FQ409583
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCCATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|349822732|gb|FQ398119.1|FQ398119
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|349814723|gb|FQ409946.1|FQ409946
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGEST: gi|351028489|gb|FQ444770.1|FQ444770
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
EST: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGT GAGATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
genomic: GTGTGAAGGATGATACTGCCTTTGCGCCACTTACCAAAAAAGAGATCAGTgtatatgctc ... ctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTG
cttgtaccttgcagaaaattgaaattttgagaggttgccaattttctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGATATCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCT
ttttctgctt CT-rich tract
agaaaattgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttattttatttttttaactaagtgagaggcaatgttaaaggcttgtaccttgcagaaaattgaaattttgagaggttgccaattttctgcttgcagGAAATCTCATGGCATCGACTCGATGACCTTCAGCCAGTAAGTGGTGATGTGATATCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - -ggcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - accttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgcc