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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagctattagaaataatctgcttgattgtatatcatgctttcagataataacatctgttataaatttcagtgaagtatggatatatttctgatgccccctcttccaccatttctgatgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACAACAGAGTCAGCAGCATACCTTCCAGCCTTAATATTTGGGACATACATGG

Basic information

species Vitis vinifera
transcript Vv13s0019g04120.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857591|gb|DT006646.1|DT006646
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATC
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATC
EST: gi|71861495|gb|DT010550.1|DT010550
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCT
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCT
EST: gi|30255678|gb|CB971810.1|CB971810
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|32460792|gb|CD801966.1|CD801966
EST:     AAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATATTGCTATCCATTGCAATAAGTTTCTTTA
genomic: AAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGC--TATTGCTATCCATTGCAATAAGTTTCTTTA
EST: gi|110689183|gb|EE065183.1|EE065183
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|351025044|gb|FQ433461.1|FQ433461
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|71862645|gb|DT011700.1|DT011700
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|110418019|gb|EC984128.1|EC984128
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|110381307|gb|EC946633.1|EC946633
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|351037220|gb|FQ457053.1|FQ457053
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|71863408|gb|DT012463.1|DT012463
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|22010776|gb|BQ795810.1|BQ795810
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|22010775|gb|BQ795809.1|BQ795809
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|22008865|gb|BQ793899.1|BQ793899
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|30255752|gb|CB971884.1|CB971884
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|110389130|gb|EC953946.1|EC953946
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|349828743|gb|FQ418478.1|FQ418478
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|110721127|gb|EE097773.1|EE097773
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|71860253|gb|DT009308.1|DT009308
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|351017619|gb|FQ435972.1|FQ435972
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|161714461|gb|FC064448.1|FC064448
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCTTTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
EST: gi|110402278|gb|EC959746.1|EC959746
EST:     TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGG                         TGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA
genomic: TCCCTGATCAAGAGCTTTCCTTATTTTCCCTCTTGAAAATAAGAGCAAGGgtaagaagct ... tgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtatggatatatttctgatgccccctcttccaccatttctgatgccatgtagTGGTTGCCGTCTCTTATGCTATTGCTATCCATTGCAATAAGTTTCTTTACAACAGAGTCAGCAGCATACCTTCCAGCCTTAATATTTGGGACATACATGG
                                       ttctgat  putative branch site (score: 3)
         atatatttct  TA-rich tract