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...aagcatcagaatatctctgtgtcaaatttatccactaactgttttcatcaattttgttgttagatgttgggtaatgtgaagttgtggtttatgcattcagATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTCCAGCAACGGACTGTTTTGACACAGCTCCAATGGCGGGCCAACAAGCAAA
species | Vitis vinifera |
transcript | Vv13s0019g04000.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGATGCACCATACTTGCTAGAGATTTTATATGAAGATGATGATGTG ATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTCEST: gi|161716883|gb|FC068117.1|FC068117
genomic: AGCCTGATGCACCATACTTGCTAGAGATTTTATATGAAGATGATGATGTGgtaatgtaaa ... atgcattcagATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTC
EST: AGCCTGATGCACCATACTTGCTACAGATTTTATATGAAGATGATGATGTG ATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTC
genomic: AGCCTGATGCACCATACTTGCTAGAGATTTTATATGAAGATGATGATGTGgtaatgtaaa ... atgcattcagATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTC
catcaattttgttgttagatgttgggtaatgtgaagttgtggtttatgcattcagATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTCCAGCAACGGACTGTTTTGACACAGCTCCAATGGCGGGCCAACAAGCAAA
attttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcatcagaatatctctgtgtcaaatttatccactaactgttttcatcaattttgttgttagatgttgggtaatgtgaagttgtggtttatgcattcagATTGCTCTAAATAAGCCTTCTGGTCTACAAGTTCTACCTGGTGGACTTTTCCAGCAACGGACTGTTTTGACACAGCTCCAATGGCGGGCCAACAAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-agcatca
- - - - - - - - - - - - - - - -ccactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggt