1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataatcagaattgaatttgaaagaactattttgtggaggcttgtgttttgtttatattggtctgaagcactgaatttgtatgtgtcattatgctatgcagATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGGATCCCTTGTGAGGTATTAAAGCAGCGGTTGCAGGCAGGCATTTTTGACA
species | Vitis vinifera |
transcript | Vv13s0019g03870.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG ATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGGEST: gi|110375503|gb|EC940493.1|EC940493
genomic: CAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAGgtaatggtta ... tgctatgcagATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGG
EST: CAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG ATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGGEST: gi|161716608|gb|FC065554.1|FC065554
genomic: CAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAGgtaatggtta ... tgctatgcagATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGG
EST: CAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG ATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGG
genomic: CAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAGgtaatggtta ... tgctatgcagATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGG
ttttgtttatattggtctgaagcactgaatttgtatgtgtcattatgctatgcagATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGGATCCCTTGTGAGGTATTAAAGCAGCGGTTGCAGGCAGGCATTTTTGACA
tttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatcagaattgaatttgaaagaactattttgtggaggcttgtgttttgtttatattggtctgaagcactgaatttgtatgtgtcattatgctatgcagATCCAATCTTTAGCATCATTTTGTAGCACATTCCTGGGGACAGCAGTGCGGATCCCTTGTGAGGTATTAAAGCAGCGGTTGCAGGCAGGCATTTTTGACA
- aatcaga
- - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - ttgtgga
- - - - - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg