Sequence
atgc intronic sequence ATGC exonic sequencegtatgaagcctcaagctttctgtttttctgcacattcacaaaattatgaattatcatcacacaaagatgagatatggtgtttgaactatttttttatgttttgttcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G41980.1 (Glycine max), 3'ss of exon 5
gtatgaagcctcaagctttctgtttttctgcacattcacaaaattatgaattatcatcacacaaagatgagatatggtgtttgaactatttttttatgttttgttcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
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---------tttaatttctctgttgacttatatgacattgcggtga--aattttaatttggtttgcacaaagagttcttccaacatagttgattcatggttaa---actttcagAATGGAAGGACTTGCTTGGGGGATTTTATTTACCATTACATCACATCAGAGAAATTCTCTCCAGAGTGCCTGCTTGATTGCCTAGACCTCTCCTCTGAGC
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G34690.1 (Glycine max), 3'ss of exon 4
gtatgaagcctcaagcttt-ctgtttttctgcacattcacaaaattatgaattatcatcacacaaagatgagatatggtgtttgaactatttttttatgttttgttcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
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--------tttctgactcgacagataccctgggatcaccccgaaaaaagaaaaa----catgtactaattttctgtcatgttatgact-ttgtcttgaatatggat--tttgcagAATGGAAGAACTTGCTTGGGGGATTTTGTTTACCGTTACATAACATCAGATCAATTCTCCCCAGAGTGCCTTCTTGATTGCTTAGACATATCCTCTGAAC
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G06930.1 (Glycine max), 3'ss of exon 8
gtatgaagcctcaagctttctgtttttctgcacattcacaaaattatgaattatcatcacacaaagatgagatatggtgtttgaactatttttttatgttttgttca-tttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
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-------------------------------------gtgaaatt-taaatttggttttcacaaaga--------gttcttccaaca--tagttgattcattgttaaattttcagAATGGAAGAAGTTGCTTGGGGGATTTTATTTACCATTACATCACATCAGAGAAATTCTCTCCAGAGTGCCTGCTTGATTGCCTAGACCTCTCCTCTGAAC
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G03610.1 (Glycine max), 3'ss of exon 4
gtatgaagcctcaagctttctgtttttctgcacattcacaaaattatgaatt--atcatcacacaaagatgagatatggtgtttgaactatttttttatgttttgttcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
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--------------tcaccctgaaaaaaaaaacatgtatattaccttcaatgtgatgttctctagttaattttgtgtcaagttatgac-attgtcttgaatatggatt-tttgcagAATGGAAGAACTTGCTTGGGGGATTTTGTTTACCGTTACATAACATCAGATCAATTCTCCCCGGAGTGCCTTCTTGATTGCTTAGACATATCCTCTGAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110730615|gb|EE107899.1|EE107899EST: CTTTAGCTGAAATGGAAGTTCCTGAGTCATTTTTGGAAGCTCTTCCAAAG AATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGAT
genomic: CTTTAGCTGAAATGGAAGTTCCTGAGTCATTTTTGGAAGCTCTTCCAAAGgtatgaagcc ... tcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGAT
EST:
gi|32249329|gb|CD715148.1|CD715148EST: CTTTAGCTGAAATGGAAGTTCCTGAGTCATTTTTGGAAGCTCTTCCAAAG AATGGGAGAGCCTGTCTGGGGGACATTATTTATCGGTATATTACATCAGAT
genomic: CTTTAGCTGAAATGGAAGTTCCTGAGTCATTTTTGGAAGCTCTTCCAAAGgtatgaagcc ... tcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacaaagatgagatatggtgtttgaactatttttttatgttttgttcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
ttttgttc CT-rich tract
aactatttttttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaagcctcaagctttctgtttttctgcacattcacaaaattatgaattatcatcacacaaagatgagatatggtgtttgaactatttttttatgttttgttcatttgcagAATGGGAGAGCTTGTCTAGGGGACATTATTTATCGGTATATTACATCAGATCAATTCTCCTCAGAGTGCCTGCTTGATTGCCTTGACCTGTCCTCTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC