Sequence
atgc intronic sequence ATGC exonic sequence...tttagtgcattgcaagagctttcacctaatcccttattctcatgattcttatttatgaggtttcctttcatggtaaatttattctttgcatgattacaagGTATGTTGATCTGAAAGCATGCATCACTCGACTACCTGAGGATGGATATGGAGCAAATCTTCCTACATGGCCTGGACGCTTGCAAAATTATCCTGACCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G07190.1 (Glycine max), 3'ss of exon 5
----tttagtgcattgcaagagctt-tcacctaatcccttattctcatgattcttatttatgaggtttcctttcatggtaaatttattctttgcatgatta--caagGTATGTTGATCTGAAAGCATGCATCACTCGACTACCTGAGGATGGATATGGAGCAAATCTTCCTACATGGCCTGGACGCTTGCAAAATTATCCTGACCGG
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caagcttcatgaatcatgatagcttatcgtgcaccagtgctttatcaaaa-----aattacaa--tcccaaatattgatgatttcattatttgcttgattaatttagGTATGTTAATCTAAAACCATGCATCTCTCAATTGCCTGAGAATGGATATGGAGCAAATGTTGCCCGATGGCCTGTACGCTTGCATACACCACCTGATAGG
upper sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G41770.1 (Glycine max), 3'ss of exon 5
----tttagtgcattgcaagagctt-tcacctaatcccttattctcatgattcttatttatgaggtttcctttcatggtaaatttattctttgcatgatta--caagGTATGTTGATCTGAAAGCATGCATCACTCGACTACCTGAGGATGGATATGGAGCAAATCTTCCTACATGGCCTGGACGCTTGCAAAATTATCCTGACCGG
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caagcttcaggaatcatgatagcttatcatgcatcagtgttttatcaaaa-----aattacaag--ccccaatattggtgatttcattatttgcttgattgatttagGTATGTTAATCTAAAATCATGCATCTCTCAATTGCCTGAGAATGGATATGGAGCAAATGTTGCTCGATGGCCGGCACGCTTGCATACACCACCTGATAGG
upper sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 5
---tttagtgcattgcaagagctttcacctaatcccttattctcatgattcttatttatgaggtttcctttcatggtaaatttattctttgcatgatta--caagGTATGTTGATCTGAAAGCATGCATCACTCGACTACCTGAGGATGGATATGGAGCAAATCTTCCTACATGGCCTGGACGCTTGCAAAATTATCCTGACCGG
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ttgggtgaagcctcatgatagcttttcacacatc--ttagtgttattattaaaatttaatggct---cattattggtgattttgttaattacttgattaatctagGTATGTTGATCTAAAAGCATGCATCTCTGAATTGCCTAAGAACGGATATGGAGCAAATGTTACTGAATGGCCTGCACGTTTGCAAACCCCCCCTGATAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttatttatgaggtttcctttcatggtaaatttattctttgcatgattacaagGTATGTTGATCTGAAAGCATGCATCACTCGACTACCTGAGGATGGATATGGAGCAAATCTTCCTACATGGCCTGGACGCTTGCAAAATTATCCTGACCGG
taaatttattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttagtgcattgcaagagctttcacctaatcccttattctcatgattcttatttatgaggtttcctttcatggtaaatttattctttgcatgattacaagGTATGTTGATCTGAAAGCATGCATCACTCGACTACCTGAGGATGGATATGGAGCAAATCTTCCTACATGGCCTGGACGCTTGCAAAATTATCCTGACCGG
- - -tgcattg
- - - - - - - - - - - cacctaa
- - - - - - - - - - - - - - -tccctta
- - - - - - - - - - - - - - - - - - - ctcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgca